Hb_000236_170

Information

Type -
Description -
Location Contig236: 170909-171172
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012071088.1
description PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01087 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24678: 170716-170959 , PASA_asmbl_24679: 170994-171092 , PASA_asmbl_24680: 171590-175018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_170 0.0 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
2 Hb_000042_350 0.2221651352 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
3 Hb_003988_020 0.2384110724 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
4 Hb_001894_080 0.2408519927 - - ATP binding protein, putative [Ricinus communis]
5 Hb_002003_100 0.24435831 - - -
6 Hb_001341_140 0.2535443146 - - -
7 Hb_006663_110 0.2917157429 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
8 Hb_000302_350 0.2943201446 - - polygalacturonase, putative [Ricinus communis]
9 Hb_000676_280 0.2947290897 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001396_270 0.2978515884 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
11 Hb_000116_200 0.2978828444 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
12 Hb_004785_050 0.2992428982 - - PREDICTED: serine decarboxylase [Jatropha curcas]
13 Hb_001369_680 0.3010141994 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
14 Hb_000164_210 0.3017358816 - - glutaredoxin-1, grx1, putative [Ricinus communis]
15 Hb_006538_160 0.3046616671 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000100_060 0.3089084024 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
17 Hb_004330_060 0.3092658029 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
18 Hb_000896_070 0.3107442178 - - ammonium transporter, putative [Ricinus communis]
19 Hb_036693_020 0.3150608441 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
20 Hb_000347_210 0.3178541229 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_170 Hb_000236_170 Hb_000042_350 Hb_000042_350 Hb_000236_170--Hb_000042_350 Hb_003988_020 Hb_003988_020 Hb_000236_170--Hb_003988_020 Hb_001894_080 Hb_001894_080 Hb_000236_170--Hb_001894_080 Hb_002003_100 Hb_002003_100 Hb_000236_170--Hb_002003_100 Hb_001341_140 Hb_001341_140 Hb_000236_170--Hb_001341_140 Hb_006663_110 Hb_006663_110 Hb_000236_170--Hb_006663_110 Hb_000042_350--Hb_003988_020 Hb_000042_350--Hb_002003_100 Hb_004330_060 Hb_004330_060 Hb_000042_350--Hb_004330_060 Hb_001396_270 Hb_001396_270 Hb_000042_350--Hb_001396_270 Hb_039946_040 Hb_039946_040 Hb_000042_350--Hb_039946_040 Hb_000164_210 Hb_000164_210 Hb_000042_350--Hb_000164_210 Hb_003988_020--Hb_002003_100 Hb_003988_020--Hb_001396_270 Hb_003988_020--Hb_000164_210 Hb_034858_010 Hb_034858_010 Hb_003988_020--Hb_034858_010 Hb_000042_120 Hb_000042_120 Hb_003988_020--Hb_000042_120 Hb_001894_080--Hb_001341_140 Hb_004947_010 Hb_004947_010 Hb_001894_080--Hb_004947_010 Hb_033153_080 Hb_033153_080 Hb_001894_080--Hb_033153_080 Hb_016875_010 Hb_016875_010 Hb_001894_080--Hb_016875_010 Hb_094529_020 Hb_094529_020 Hb_001894_080--Hb_094529_020 Hb_002003_100--Hb_004330_060 Hb_000935_060 Hb_000935_060 Hb_002003_100--Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_002003_100--Hb_004102_150 Hb_000926_240 Hb_000926_240 Hb_002003_100--Hb_000926_240 Hb_036693_020 Hb_036693_020 Hb_001341_140--Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_001341_140--Hb_003050_240 Hb_000579_160 Hb_000579_160 Hb_001341_140--Hb_000579_160 Hb_003902_080 Hb_003902_080 Hb_001341_140--Hb_003902_080 Hb_183671_010 Hb_183671_010 Hb_006663_110--Hb_183671_010 Hb_001369_680 Hb_001369_680 Hb_006663_110--Hb_001369_680 Hb_115832_010 Hb_115832_010 Hb_006663_110--Hb_115832_010 Hb_001688_090 Hb_001688_090 Hb_006663_110--Hb_001688_090 Hb_001391_050 Hb_001391_050 Hb_006663_110--Hb_001391_050 Hb_005601_030 Hb_005601_030 Hb_006663_110--Hb_005601_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14849 0 0.435475 4.38205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.419416 0 0.392405 0

CAGE analysis