Hb_000707_040

Information

Type -
Description -
Location Contig707: 57561-58016
Sequence    

Annotation

kegg
ID tcc:TCM_021829
description hypothetical protein
nr
ID XP_007026874.1
description Uncharacterized protein TCM_021829 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ERA0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_021829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55141: 57956-58299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_040 0.0 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
2 Hb_001329_020 0.2130475967 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
3 Hb_002164_010 0.2399089039 - - Stellacyanin, putative [Ricinus communis]
4 Hb_000816_190 0.2507016205 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003536_090 0.2509953247 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_004117_330 0.2520427995 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000089_200 0.2548840745 - - hypothetical protein VITISV_019292 [Vitis vinifera]
8 Hb_000100_060 0.2564550762 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
9 Hb_021596_060 0.2567116878 - - PREDICTED: peroxidase 56-like, partial [Solanum tuberosum]
10 Hb_000302_100 0.2604513582 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
11 Hb_011485_090 0.2619576705 - - -
12 Hb_004586_330 0.2621032917 - - conserved hypothetical protein [Ricinus communis]
13 Hb_128473_010 0.2625823476 - - -
14 Hb_004785_050 0.266005435 - - PREDICTED: serine decarboxylase [Jatropha curcas]
15 Hb_002243_050 0.2674910043 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
16 Hb_118228_010 0.2731499453 - - PREDICTED: pirin-like protein [Jatropha curcas]
17 Hb_003875_010 0.2750973584 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
18 Hb_000311_040 0.2766077915 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
19 Hb_000311_030 0.2818647134 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
20 Hb_104571_010 0.2847435249 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]

Gene co-expression network

sample Hb_000707_040 Hb_000707_040 Hb_001329_020 Hb_001329_020 Hb_000707_040--Hb_001329_020 Hb_002164_010 Hb_002164_010 Hb_000707_040--Hb_002164_010 Hb_000816_190 Hb_000816_190 Hb_000707_040--Hb_000816_190 Hb_003536_090 Hb_003536_090 Hb_000707_040--Hb_003536_090 Hb_004117_330 Hb_004117_330 Hb_000707_040--Hb_004117_330 Hb_000089_200 Hb_000089_200 Hb_000707_040--Hb_000089_200 Hb_000302_100 Hb_000302_100 Hb_001329_020--Hb_000302_100 Hb_002122_060 Hb_002122_060 Hb_001329_020--Hb_002122_060 Hb_001329_020--Hb_004117_330 Hb_001329_020--Hb_003536_090 Hb_012753_180 Hb_012753_180 Hb_001329_020--Hb_012753_180 Hb_002164_010--Hb_003536_090 Hb_000236_210 Hb_000236_210 Hb_002164_010--Hb_000236_210 Hb_000375_140 Hb_000375_140 Hb_002164_010--Hb_000375_140 Hb_001269_100 Hb_001269_100 Hb_002164_010--Hb_001269_100 Hb_020831_060 Hb_020831_060 Hb_002164_010--Hb_020831_060 Hb_002164_010--Hb_000816_190 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010 Hb_003536_090--Hb_000236_210 Hb_017434_080 Hb_017434_080 Hb_003536_090--Hb_017434_080 Hb_003536_090--Hb_020831_060 Hb_003536_090--Hb_001269_100 Hb_003536_090--Hb_000302_100 Hb_000413_080 Hb_000413_080 Hb_004117_330--Hb_000413_080 Hb_007575_090 Hb_007575_090 Hb_004117_330--Hb_007575_090 Hb_005144_170 Hb_005144_170 Hb_004117_330--Hb_005144_170 Hb_008185_020 Hb_008185_020 Hb_004117_330--Hb_008185_020 Hb_004117_330--Hb_000302_100 Hb_004117_330--Hb_066514_010 Hb_000654_030 Hb_000654_030 Hb_000089_200--Hb_000654_030 Hb_000089_200--Hb_001329_020 Hb_000110_380 Hb_000110_380 Hb_000089_200--Hb_000110_380 Hb_002259_060 Hb_002259_060 Hb_000089_200--Hb_002259_060 Hb_011485_090 Hb_011485_090 Hb_000089_200--Hb_011485_090 Hb_000656_190 Hb_000656_190 Hb_000089_200--Hb_000656_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285896 0.209194 0.269363 1.46503 0.201941 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156836 0.123194 0 0.155168 0

CAGE analysis