Hb_005306_090

Information

Type -
Description -
Location Contig5306: 59047-64165
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0019028
description coatomer subunit zeta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47359: 62958-63275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_090 0.0 - - -
2 Hb_021596_060 0.160033708 - - PREDICTED: peroxidase 56-like, partial [Solanum tuberosum]
3 Hb_000302_100 0.2499820044 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
4 Hb_001329_020 0.2533517877 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
5 Hb_108216_030 0.2590573015 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
6 Hb_012753_180 0.2595552619 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
7 Hb_007075_020 0.2596243118 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
8 Hb_002122_060 0.2693972624 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
9 Hb_000270_550 0.2705285005 - - -
10 Hb_000174_020 0.2721313661 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
11 Hb_156850_040 0.2741137445 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
12 Hb_003582_010 0.278592985 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
13 Hb_000172_150 0.280034997 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
14 Hb_000733_090 0.2801883246 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
15 Hb_000723_210 0.2808947326 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
16 Hb_001357_030 0.2815807977 - - hypothetical protein F383_04880 [Gossypium arboreum]
17 Hb_000352_240 0.2822017009 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_005001_010 0.2823992038 - - GAST1 protein precursor, putative [Ricinus communis]
19 Hb_104169_010 0.2835057806 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_000365_040 0.2835169294 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_090 Hb_005306_090 Hb_021596_060 Hb_021596_060 Hb_005306_090--Hb_021596_060 Hb_000302_100 Hb_000302_100 Hb_005306_090--Hb_000302_100 Hb_001329_020 Hb_001329_020 Hb_005306_090--Hb_001329_020 Hb_108216_030 Hb_108216_030 Hb_005306_090--Hb_108216_030 Hb_012753_180 Hb_012753_180 Hb_005306_090--Hb_012753_180 Hb_007075_020 Hb_007075_020 Hb_005306_090--Hb_007075_020 Hb_000676_280 Hb_000676_280 Hb_021596_060--Hb_000676_280 Hb_021596_060--Hb_012753_180 Hb_000707_040 Hb_000707_040 Hb_021596_060--Hb_000707_040 Hb_021596_060--Hb_001329_020 Hb_004453_190 Hb_004453_190 Hb_021596_060--Hb_004453_190 Hb_066514_010 Hb_066514_010 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_000302_100--Hb_001329_020 Hb_002122_060 Hb_002122_060 Hb_001329_020--Hb_002122_060 Hb_004117_330 Hb_004117_330 Hb_001329_020--Hb_004117_330 Hb_003536_090 Hb_003536_090 Hb_001329_020--Hb_003536_090 Hb_001329_020--Hb_012753_180 Hb_001329_020--Hb_000707_040 Hb_000365_040 Hb_000365_040 Hb_108216_030--Hb_000365_040 Hb_003952_080 Hb_003952_080 Hb_108216_030--Hb_003952_080 Hb_156850_040 Hb_156850_040 Hb_108216_030--Hb_156850_040 Hb_009851_040 Hb_009851_040 Hb_108216_030--Hb_009851_040 Hb_001269_570 Hb_001269_570 Hb_108216_030--Hb_001269_570 Hb_001247_080 Hb_001247_080 Hb_108216_030--Hb_001247_080 Hb_003226_130 Hb_003226_130 Hb_012753_180--Hb_003226_130 Hb_027136_020 Hb_027136_020 Hb_012753_180--Hb_027136_020 Hb_005227_050 Hb_005227_050 Hb_012753_180--Hb_005227_050 Hb_012753_180--Hb_000676_280 Hb_021443_020 Hb_021443_020 Hb_007075_020--Hb_021443_020 Hb_001227_010 Hb_001227_010 Hb_007075_020--Hb_001227_010 Hb_035006_010 Hb_035006_010 Hb_007075_020--Hb_035006_010 Hb_000174_020 Hb_000174_020 Hb_007075_020--Hb_000174_020 Hb_006890_050 Hb_006890_050 Hb_007075_020--Hb_006890_050 Hb_103149_010 Hb_103149_010 Hb_007075_020--Hb_103149_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0594064 0.419055 0.0457887 1.2477 0.171714 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.109385 0 0.136713 0

CAGE analysis