Hb_007075_020

Information

Type transcription factor
Description TF Family: TRAF
Location Contig7075: 22821-25154
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04190g
description POPTRDRAFT_560428; ankyrin repeat family protein
nr
ID XP_002308905.1
description ankyrin repeat family protein [Populus trichocarpa]
swissprot
ID Q9ZVC2
description Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1
trembl
ID B9H966
description Ankyrin repeat family protein OS=Populus trichocarpa GN=POPTR_0006s04190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55156: 23553-25242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007075_020 0.0 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
2 Hb_021443_020 0.1330275139 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
3 Hb_001227_010 0.1353076815 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
4 Hb_035006_010 0.1369307288 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
5 Hb_000174_020 0.1489487861 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
6 Hb_006890_050 0.1524813294 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
7 Hb_103149_010 0.1570130438 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
8 Hb_005900_020 0.1589667058 - - -
9 Hb_066350_010 0.1599452858 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
10 Hb_001610_050 0.1601591029 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
11 Hb_002053_090 0.1665498238 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000840_220 0.1668363419 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
13 Hb_000270_550 0.17046012 - - -
14 Hb_007313_050 0.1769989648 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
15 Hb_000286_210 0.1791962005 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
16 Hb_001013_060 0.1804938366 - - -
17 Hb_006816_540 0.1858223102 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
18 Hb_002639_120 0.1863970922 - - unnamed protein product [Vitis vinifera]
19 Hb_003939_090 0.1871611371 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_002267_040 0.1876598985 - - -

Gene co-expression network

sample Hb_007075_020 Hb_007075_020 Hb_021443_020 Hb_021443_020 Hb_007075_020--Hb_021443_020 Hb_001227_010 Hb_001227_010 Hb_007075_020--Hb_001227_010 Hb_035006_010 Hb_035006_010 Hb_007075_020--Hb_035006_010 Hb_000174_020 Hb_000174_020 Hb_007075_020--Hb_000174_020 Hb_006890_050 Hb_006890_050 Hb_007075_020--Hb_006890_050 Hb_103149_010 Hb_103149_010 Hb_007075_020--Hb_103149_010 Hb_007313_050 Hb_007313_050 Hb_021443_020--Hb_007313_050 Hb_021443_020--Hb_035006_010 Hb_001059_050 Hb_001059_050 Hb_021443_020--Hb_001059_050 Hb_000286_210 Hb_000286_210 Hb_021443_020--Hb_000286_210 Hb_001610_050 Hb_001610_050 Hb_021443_020--Hb_001610_050 Hb_021443_020--Hb_001227_010 Hb_002639_120 Hb_002639_120 Hb_001227_010--Hb_002639_120 Hb_151616_010 Hb_151616_010 Hb_001227_010--Hb_151616_010 Hb_001227_010--Hb_006890_050 Hb_132517_010 Hb_132517_010 Hb_001227_010--Hb_132517_010 Hb_001227_010--Hb_001610_050 Hb_035006_010--Hb_007313_050 Hb_003939_090 Hb_003939_090 Hb_035006_010--Hb_003939_090 Hb_035006_010--Hb_000286_210 Hb_005900_020 Hb_005900_020 Hb_035006_010--Hb_005900_020 Hb_035006_010--Hb_001059_050 Hb_000270_550 Hb_000270_550 Hb_000174_020--Hb_000270_550 Hb_000174_020--Hb_005900_020 Hb_003582_010 Hb_003582_010 Hb_000174_020--Hb_003582_010 Hb_066350_010 Hb_066350_010 Hb_000174_020--Hb_066350_010 Hb_008385_010 Hb_008385_010 Hb_000174_020--Hb_008385_010 Hb_006890_050--Hb_002639_120 Hb_007885_120 Hb_007885_120 Hb_006890_050--Hb_007885_120 Hb_000840_220 Hb_000840_220 Hb_006890_050--Hb_000840_220 Hb_006816_540 Hb_006816_540 Hb_006890_050--Hb_006816_540 Hb_000702_040 Hb_000702_040 Hb_006890_050--Hb_000702_040 Hb_000604_050 Hb_000604_050 Hb_103149_010--Hb_000604_050 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_103149_010--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_103149_010--Hb_004586_230 Hb_001016_040 Hb_001016_040 Hb_103149_010--Hb_001016_040 Hb_103149_010--Hb_003939_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.300953 4.51333 0.300699 7.17798 0.14051 0.0524298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0484219 1.16516 0.0539098

CAGE analysis