Hb_000352_240

Information

Type -
Description -
Location Contig352: 212903-213929
Sequence    

Annotation

kegg
ID rcu:RCOM_1443650
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002512789.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9RGT0
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_1443650 PE=4 SV=1
Gene Ontology
ID GO:0046872
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_240 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_004308_020 0.1809577222 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
3 Hb_001810_040 0.2049940322 - - -
4 Hb_003226_130 0.2106431008 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
5 Hb_000358_130 0.2158002485 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
6 Hb_016734_050 0.2294037524 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
7 Hb_000035_510 0.2350964351 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
8 Hb_001097_080 0.2358718786 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
9 Hb_010638_030 0.2437320678 - - oleosin1 [Plukenetia volubilis]
10 Hb_015175_060 0.2501870707 - - copper transport protein atox1, putative [Ricinus communis]
11 Hb_002686_100 0.2543099484 - - -
12 Hb_005227_050 0.2549055392 - - conserved hypothetical protein [Ricinus communis]
13 Hb_056718_010 0.2599551865 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
14 Hb_002243_050 0.2600377408 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
15 Hb_007382_130 0.2611316372 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
16 Hb_006052_080 0.2625204144 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
17 Hb_001369_500 0.264522489 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
18 Hb_000723_210 0.2655130083 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
19 Hb_108216_030 0.2670847891 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_005097_010 0.2688693908 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000352_240 Hb_000352_240 Hb_004308_020 Hb_004308_020 Hb_000352_240--Hb_004308_020 Hb_001810_040 Hb_001810_040 Hb_000352_240--Hb_001810_040 Hb_003226_130 Hb_003226_130 Hb_000352_240--Hb_003226_130 Hb_000358_130 Hb_000358_130 Hb_000352_240--Hb_000358_130 Hb_016734_050 Hb_016734_050 Hb_000352_240--Hb_016734_050 Hb_000035_510 Hb_000035_510 Hb_000352_240--Hb_000035_510 Hb_004308_020--Hb_001810_040 Hb_001431_100 Hb_001431_100 Hb_004308_020--Hb_001431_100 Hb_006469_110 Hb_006469_110 Hb_004308_020--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_004308_020--Hb_002309_030 Hb_001369_500 Hb_001369_500 Hb_004308_020--Hb_001369_500 Hb_023768_010 Hb_023768_010 Hb_001810_040--Hb_023768_010 Hb_002320_050 Hb_002320_050 Hb_001810_040--Hb_002320_050 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_002277_020 Hb_002277_020 Hb_001810_040--Hb_002277_020 Hb_000429_080 Hb_000429_080 Hb_001810_040--Hb_000429_080 Hb_007382_130 Hb_007382_130 Hb_003226_130--Hb_007382_130 Hb_005227_050 Hb_005227_050 Hb_003226_130--Hb_005227_050 Hb_000313_280 Hb_000313_280 Hb_003226_130--Hb_000313_280 Hb_003226_130--Hb_001810_040 Hb_123301_010 Hb_123301_010 Hb_003226_130--Hb_123301_010 Hb_001097_080 Hb_001097_080 Hb_003226_130--Hb_001097_080 Hb_001396_080 Hb_001396_080 Hb_000358_130--Hb_001396_080 Hb_000358_130--Hb_003226_130 Hb_005356_050 Hb_005356_050 Hb_000358_130--Hb_005356_050 Hb_009010_040 Hb_009010_040 Hb_000358_130--Hb_009010_040 Hb_000723_210 Hb_000723_210 Hb_000358_130--Hb_000723_210 Hb_015175_060 Hb_015175_060 Hb_016734_050--Hb_015175_060 Hb_000541_030 Hb_000541_030 Hb_016734_050--Hb_000541_030 Hb_029508_020 Hb_029508_020 Hb_016734_050--Hb_029508_020 Hb_012799_080 Hb_012799_080 Hb_016734_050--Hb_012799_080 Hb_056718_010 Hb_056718_010 Hb_016734_050--Hb_056718_010 Hb_001246_080 Hb_001246_080 Hb_016734_050--Hb_001246_080 Hb_006052_080 Hb_006052_080 Hb_000035_510--Hb_006052_080 Hb_001053_100 Hb_001053_100 Hb_000035_510--Hb_001053_100 Hb_103931_010 Hb_103931_010 Hb_000035_510--Hb_103931_010 Hb_005463_120 Hb_005463_120 Hb_000035_510--Hb_005463_120 Hb_000027_010 Hb_000027_010 Hb_000035_510--Hb_000027_010 Hb_000628_100 Hb_000628_100 Hb_000035_510--Hb_000628_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.309693 0.154599 1.81226 0.125294 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0756411 0.178407 0 0 0

CAGE analysis