Hb_000445_010

Information

Type -
Description -
Location Contig445: 4022-4429
Sequence    

Annotation

kegg
ID pop:POPTR_0021s00480g
description hypothetical protein
nr
ID XP_011007875.1
description PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0D2V800
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G018200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42851: 4097-4362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_010 0.0 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
2 Hb_006816_160 0.1926169751 - - hypothetical protein RCOM_1434920 [Ricinus communis]
3 Hb_009252_120 0.2315940377 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002820_120 0.2402399178 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
5 Hb_111881_030 0.241611953 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
6 Hb_003910_020 0.2424581036 - - PREDICTED: reticulon-like protein B13 [Jatropha curcas]
7 Hb_008725_190 0.2518108281 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
8 Hb_000003_430 0.2525638303 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_007304_100 0.2700849084 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
10 Hb_001794_080 0.2783707131 - - conserved hypothetical protein [Ricinus communis]
11 Hb_148971_010 0.2824381082 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_162047_010 0.2824396841 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
13 Hb_001999_240 0.283239146 - - PREDICTED: josephin-like protein [Populus euphratica]
14 Hb_001481_110 0.2842393056 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
15 Hb_012753_180 0.2871560951 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
16 Hb_000805_330 0.2885924015 - - PREDICTED: ricin-like [Elaeis guineensis]
17 Hb_001956_190 0.2913677276 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
18 Hb_005045_050 0.2931672359 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
19 Hb_026620_010 0.2945844409 - - -
20 Hb_000369_050 0.2947353516 - - Ankyrin repeat family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000445_010 Hb_000445_010 Hb_006816_160 Hb_006816_160 Hb_000445_010--Hb_006816_160 Hb_009252_120 Hb_009252_120 Hb_000445_010--Hb_009252_120 Hb_002820_120 Hb_002820_120 Hb_000445_010--Hb_002820_120 Hb_111881_030 Hb_111881_030 Hb_000445_010--Hb_111881_030 Hb_003910_020 Hb_003910_020 Hb_000445_010--Hb_003910_020 Hb_008725_190 Hb_008725_190 Hb_000445_010--Hb_008725_190 Hb_006816_160--Hb_009252_120 Hb_006816_160--Hb_002820_120 Hb_162047_010 Hb_162047_010 Hb_006816_160--Hb_162047_010 Hb_004767_010 Hb_004767_010 Hb_006816_160--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_006816_160--Hb_161954_010 Hb_009252_120--Hb_002820_120 Hb_009252_120--Hb_003910_020 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_035006_010 Hb_035006_010 Hb_002820_120--Hb_035006_010 Hb_001481_110 Hb_001481_110 Hb_002820_120--Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_002820_120--Hb_005687_060 Hb_001059_050 Hb_001059_050 Hb_002820_120--Hb_001059_050 Hb_001956_190 Hb_001956_190 Hb_111881_030--Hb_001956_190 Hb_000003_430 Hb_000003_430 Hb_111881_030--Hb_000003_430 Hb_000003_760 Hb_000003_760 Hb_111881_030--Hb_000003_760 Hb_000506_130 Hb_000506_130 Hb_111881_030--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_111881_030--Hb_052113_020 Hb_111881_030--Hb_008725_190 Hb_148971_010 Hb_148971_010 Hb_003910_020--Hb_148971_010 Hb_003910_020--Hb_000003_430 Hb_003910_020--Hb_002820_120 Hb_011416_020 Hb_011416_020 Hb_003910_020--Hb_011416_020 Hb_001791_010 Hb_001791_010 Hb_003910_020--Hb_001791_010 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_001227_010 Hb_001227_010 Hb_008725_190--Hb_001227_010 Hb_007304_100 Hb_007304_100 Hb_008725_190--Hb_007304_100 Hb_131957_010 Hb_131957_010 Hb_008725_190--Hb_131957_010 Hb_043115_010 Hb_043115_010 Hb_008725_190--Hb_043115_010 Hb_000661_010 Hb_000661_010 Hb_008725_190--Hb_000661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29208 2.23736 0 1.77529 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383798 0.150729 0 0.12869 0

CAGE analysis