Hb_003910_020

Information

Type -
Description -
Location Contig3910: 18168-19052
Sequence    

Annotation

kegg
ID rcu:RCOM_0602350
description hypothetical protein
nr
ID XP_012079168.1
description PREDICTED: reticulon-like protein B13 [Jatropha curcas]
swissprot
ID O64837
description Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1
trembl
ID A0A067K6Z5
description Reticulon-like protein OS=Jatropha curcas GN=JCGZ_12338 PE=4 SV=1
Gene Ontology
ID GO:0071458
description reticulon-like protein b13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003910_020 0.0 - - PREDICTED: reticulon-like protein B13 [Jatropha curcas]
2 Hb_009252_120 0.1993272835 - - conserved hypothetical protein [Ricinus communis]
3 Hb_148971_010 0.1994742931 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_000003_430 0.2140383395 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_002820_120 0.225462687 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
6 Hb_011416_020 0.2307840599 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001791_010 0.2320091391 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
8 Hb_052113_020 0.2368511794 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
9 Hb_111881_030 0.2371282644 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
10 Hb_000445_010 0.2424581036 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
11 Hb_002326_080 0.2428701294 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
12 Hb_001999_240 0.2431964449 - - PREDICTED: josephin-like protein [Populus euphratica]
13 Hb_000699_190 0.2432242523 - - unknown [Populus trichocarpa]
14 Hb_123885_010 0.2446990984 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_006816_160 0.2463496641 - - hypothetical protein RCOM_1434920 [Ricinus communis]
16 Hb_001318_130 0.2487261941 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
17 Hb_001131_100 0.2502189073 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
18 Hb_011120_020 0.2515918757 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
19 Hb_000431_030 0.2519803735 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
20 Hb_008725_190 0.2530351638 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_003910_020 Hb_003910_020 Hb_009252_120 Hb_009252_120 Hb_003910_020--Hb_009252_120 Hb_148971_010 Hb_148971_010 Hb_003910_020--Hb_148971_010 Hb_000003_430 Hb_000003_430 Hb_003910_020--Hb_000003_430 Hb_002820_120 Hb_002820_120 Hb_003910_020--Hb_002820_120 Hb_011416_020 Hb_011416_020 Hb_003910_020--Hb_011416_020 Hb_001791_010 Hb_001791_010 Hb_003910_020--Hb_001791_010 Hb_006816_160 Hb_006816_160 Hb_009252_120--Hb_006816_160 Hb_009252_120--Hb_002820_120 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_162047_010 Hb_162047_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_148971_010--Hb_162047_010 Hb_004195_030 Hb_004195_030 Hb_148971_010--Hb_004195_030 Hb_000331_690 Hb_000331_690 Hb_148971_010--Hb_000331_690 Hb_002393_060 Hb_002393_060 Hb_148971_010--Hb_002393_060 Hb_004089_010 Hb_004089_010 Hb_148971_010--Hb_004089_010 Hb_111881_030 Hb_111881_030 Hb_000003_430--Hb_111881_030 Hb_001956_190 Hb_001956_190 Hb_000003_430--Hb_001956_190 Hb_000270_770 Hb_000270_770 Hb_000003_430--Hb_000270_770 Hb_011120_020 Hb_011120_020 Hb_000003_430--Hb_011120_020 Hb_187697_010 Hb_187697_010 Hb_000003_430--Hb_187697_010 Hb_000003_430--Hb_011416_020 Hb_002820_120--Hb_006816_160 Hb_035006_010 Hb_035006_010 Hb_002820_120--Hb_035006_010 Hb_001481_110 Hb_001481_110 Hb_002820_120--Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_002820_120--Hb_005687_060 Hb_001059_050 Hb_001059_050 Hb_002820_120--Hb_001059_050 Hb_002835_260 Hb_002835_260 Hb_011416_020--Hb_002835_260 Hb_000142_010 Hb_000142_010 Hb_011416_020--Hb_000142_010 Hb_011416_020--Hb_011120_020 Hb_011416_020--Hb_001956_190 Hb_000506_130 Hb_000506_130 Hb_011416_020--Hb_000506_130 Hb_001195_500 Hb_001195_500 Hb_001791_010--Hb_001195_500 Hb_003371_210 Hb_003371_210 Hb_001791_010--Hb_003371_210 Hb_098160_010 Hb_098160_010 Hb_001791_010--Hb_098160_010 Hb_009510_050 Hb_009510_050 Hb_001791_010--Hb_009510_050 Hb_000808_160 Hb_000808_160 Hb_001791_010--Hb_000808_160 Hb_004032_250 Hb_004032_250 Hb_001791_010--Hb_004032_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.040554 1.95993 0.0327399 0.895032 0 0.129809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.187966 0.147739 0 0.302099 0

CAGE analysis