Hb_000032_580

Information

Type -
Description -
Location Contig32: 429840-430433
Sequence    

Annotation

kegg
ID rcu:RCOM_1311780
description hypothetical protein
nr
ID XP_002518845.1
description hypothetical protein RCOM_1311780 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1311780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33772: 430179-430443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_580 0.0 - - hypothetical protein RCOM_1311780 [Ricinus communis]
2 Hb_007101_290 0.2310040228 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
3 Hb_000836_230 0.2379006706 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
4 Hb_000140_160 0.2430452015 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
5 Hb_001268_130 0.2695163267 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
6 Hb_000256_100 0.2715221267 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
7 Hb_026527_020 0.272114349 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
8 Hb_000251_060 0.275950969 - - PREDICTED: uncharacterized protein LOC105649757 isoform X2 [Jatropha curcas]
9 Hb_003038_170 0.2763235247 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007181_030 0.2806569975 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
11 Hb_027445_090 0.2875949177 - - oleosin 18.2 kDa-like [Jatropha curcas]
12 Hb_001045_050 0.289527476 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
13 Hb_080225_010 0.2899992242 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
14 Hb_006420_090 0.2904964805 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
15 Hb_006355_030 0.2922199464 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
16 Hb_000318_090 0.2976853372 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
17 Hb_000675_060 0.3018494588 - - cytochrome P450, putative [Ricinus communis]
18 Hb_001946_020 0.3037704297 - - hypothetical protein RCOM_0224470 [Ricinus communis]
19 Hb_158092_060 0.3074839594 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
20 Hb_001348_210 0.3085695222 - - defensin protein precursor [Capsicum annuum]

Gene co-expression network

sample Hb_000032_580 Hb_000032_580 Hb_007101_290 Hb_007101_290 Hb_000032_580--Hb_007101_290 Hb_000836_230 Hb_000836_230 Hb_000032_580--Hb_000836_230 Hb_000140_160 Hb_000140_160 Hb_000032_580--Hb_000140_160 Hb_001268_130 Hb_001268_130 Hb_000032_580--Hb_001268_130 Hb_000256_100 Hb_000256_100 Hb_000032_580--Hb_000256_100 Hb_026527_020 Hb_026527_020 Hb_000032_580--Hb_026527_020 Hb_001703_110 Hb_001703_110 Hb_007101_290--Hb_001703_110 Hb_006420_090 Hb_006420_090 Hb_007101_290--Hb_006420_090 Hb_003960_020 Hb_003960_020 Hb_007101_290--Hb_003960_020 Hb_002918_130 Hb_002918_130 Hb_007101_290--Hb_002918_130 Hb_008479_020 Hb_008479_020 Hb_007101_290--Hb_008479_020 Hb_007403_040 Hb_007403_040 Hb_000836_230--Hb_007403_040 Hb_020178_010 Hb_020178_010 Hb_000836_230--Hb_020178_010 Hb_031336_020 Hb_031336_020 Hb_000836_230--Hb_031336_020 Hb_007181_080 Hb_007181_080 Hb_000836_230--Hb_007181_080 Hb_001348_210 Hb_001348_210 Hb_000836_230--Hb_001348_210 Hb_001045_050 Hb_001045_050 Hb_000140_160--Hb_001045_050 Hb_027445_090 Hb_027445_090 Hb_000140_160--Hb_027445_090 Hb_000140_160--Hb_000256_100 Hb_000500_110 Hb_000500_110 Hb_000140_160--Hb_000500_110 Hb_001190_060 Hb_001190_060 Hb_000140_160--Hb_001190_060 Hb_000007_110 Hb_000007_110 Hb_000140_160--Hb_000007_110 Hb_001268_130--Hb_026527_020 Hb_007101_230 Hb_007101_230 Hb_001268_130--Hb_007101_230 Hb_007072_020 Hb_007072_020 Hb_001268_130--Hb_007072_020 Hb_003038_170 Hb_003038_170 Hb_001268_130--Hb_003038_170 Hb_000056_330 Hb_000056_330 Hb_001268_130--Hb_000056_330 Hb_000256_100--Hb_027445_090 Hb_080225_010 Hb_080225_010 Hb_000256_100--Hb_080225_010 Hb_002057_010 Hb_002057_010 Hb_000256_100--Hb_002057_010 Hb_005000_040 Hb_005000_040 Hb_000256_100--Hb_005000_040 Hb_003057_080 Hb_003057_080 Hb_000256_100--Hb_003057_080 Hb_000617_340 Hb_000617_340 Hb_000256_100--Hb_000617_340 Hb_026527_020--Hb_006420_090 Hb_007885_050 Hb_007885_050 Hb_026527_020--Hb_007885_050 Hb_011016_010 Hb_011016_010 Hb_026527_020--Hb_011016_010 Hb_000836_490 Hb_000836_490 Hb_026527_020--Hb_000836_490 Hb_026527_020--Hb_003038_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.600846 1.57895 0.655821 3.49305 0.0829117 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 9.2638 0 20.6926 0

CAGE analysis