Hb_007072_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig7072: 46642-48069
Sequence    

Annotation

kegg
ID rcu:RCOM_1313580
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID AEG74015.1
description lMYC5 [Hevea brasiliensis]
swissprot
ID O23090
description Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1
trembl
ID I3NR03
description LMYC5 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0046983
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007072_020 0.0 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
2 Hb_000926_130 0.1575091535 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_000500_110 0.1870708047 - - Blue copper protein precursor, putative [Ricinus communis]
4 Hb_000056_330 0.1889829867 - - unnamed protein product [Vitis vinifera]
5 Hb_007520_040 0.2072846367 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
6 Hb_007894_250 0.2082783869 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
7 Hb_006355_030 0.2096067086 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
8 Hb_000445_450 0.2149193807 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
9 Hb_003096_050 0.2209066886 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000816_120 0.2439591693 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
11 Hb_030291_030 0.2454817768 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
12 Hb_000213_130 0.2509683272 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
13 Hb_001268_130 0.2653672713 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
14 Hb_001190_060 0.268330814 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
15 Hb_000140_160 0.2726276975 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
16 Hb_000455_100 0.2807465334 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_003057_080 0.2817227693 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
18 Hb_001045_050 0.2824346374 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
19 Hb_010647_010 0.2845244799 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
20 Hb_002311_240 0.2882849431 - - hypothetical protein JCGZ_18937 [Jatropha curcas]

Gene co-expression network

sample Hb_007072_020 Hb_007072_020 Hb_000926_130 Hb_000926_130 Hb_007072_020--Hb_000926_130 Hb_000500_110 Hb_000500_110 Hb_007072_020--Hb_000500_110 Hb_000056_330 Hb_000056_330 Hb_007072_020--Hb_000056_330 Hb_007520_040 Hb_007520_040 Hb_007072_020--Hb_007520_040 Hb_007894_250 Hb_007894_250 Hb_007072_020--Hb_007894_250 Hb_006355_030 Hb_006355_030 Hb_007072_020--Hb_006355_030 Hb_000926_130--Hb_000056_330 Hb_000926_130--Hb_007894_250 Hb_000926_130--Hb_000500_110 Hb_003096_050 Hb_003096_050 Hb_000926_130--Hb_003096_050 Hb_001190_060 Hb_001190_060 Hb_000926_130--Hb_001190_060 Hb_003057_080 Hb_003057_080 Hb_000500_110--Hb_003057_080 Hb_030291_030 Hb_030291_030 Hb_000500_110--Hb_030291_030 Hb_000045_230 Hb_000045_230 Hb_000500_110--Hb_000045_230 Hb_000140_160 Hb_000140_160 Hb_000500_110--Hb_000140_160 Hb_000056_330--Hb_007894_250 Hb_000056_330--Hb_003096_050 Hb_000056_330--Hb_001190_060 Hb_000975_150 Hb_000975_150 Hb_000056_330--Hb_000975_150 Hb_000445_450 Hb_000445_450 Hb_007520_040--Hb_000445_450 Hb_007520_040--Hb_006355_030 Hb_007520_040--Hb_000500_110 Hb_007520_040--Hb_003057_080 Hb_000213_130 Hb_000213_130 Hb_007520_040--Hb_000213_130 Hb_002876_310 Hb_002876_310 Hb_007520_040--Hb_002876_310 Hb_007894_250--Hb_003096_050 Hb_007894_250--Hb_000975_150 Hb_007894_250--Hb_001190_060 Hb_006355_030--Hb_000445_450 Hb_006355_030--Hb_003057_080 Hb_002311_240 Hb_002311_240 Hb_006355_030--Hb_002311_240 Hb_006355_030--Hb_000500_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0215983 0.0107243 0 0.0293202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.390076 0.243817 2.84616 0

CAGE analysis