Hb_000213_130

Information

Type transcription factor
Description TF Family: HSF
Location Contig213: 272825-275966
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05680g
description POPTRDRAFT_576364; Heat Stress Transcription Factor family protein
nr
ID XP_002323320.2
description Heat Stress Transcription Factor family protein [Populus trichocarpa]
swissprot
ID O22230
description Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1
trembl
ID B9II85
description Heat Stress Transcription Factor family protein OS=Populus trichocarpa GN=POPTR_0016s05680g PE=3 SV=2
Gene Ontology
ID GO:0005634
description heat stress transcription factor b-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22063: 272780-276109
cDNA
(Sanger)
(ID:Location)		 006_L12.ab1: 273127-276074

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_130 0.0 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
2 Hb_012506_080 0.1457607597 - - amino acid transporter, putative [Ricinus communis]
3 Hb_004267_050 0.1493790852 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
4 Hb_022250_050 0.1505428862 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001140_330 0.1509474814 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
6 Hb_005120_010 0.1528373961 - - amino acid transporter, putative [Ricinus communis]
7 Hb_001040_190 0.1578175304 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
8 Hb_003119_110 0.1587535992 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
9 Hb_004190_030 0.1632505361 - - unnamed protein product [Vitis vinifera]
10 Hb_004057_050 0.1642810085 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
11 Hb_010647_010 0.1643180284 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
12 Hb_000143_010 0.1651825505 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
13 Hb_000388_160 0.1681612582 - - xyloglucan endo-1 family protein [Populus trichocarpa]
14 Hb_000692_270 0.1688647907 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
15 Hb_000563_060 0.1690060899 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
16 Hb_002161_020 0.169127472 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
17 Hb_002553_170 0.1692428567 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
18 Hb_109163_010 0.1693830645 - - polyphenol oxidase [Hevea brasiliensis]
19 Hb_002249_180 0.1695595896 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_000329_160 0.1704174955 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000213_130 Hb_000213_130 Hb_012506_080 Hb_012506_080 Hb_000213_130--Hb_012506_080 Hb_004267_050 Hb_004267_050 Hb_000213_130--Hb_004267_050 Hb_022250_050 Hb_022250_050 Hb_000213_130--Hb_022250_050 Hb_001140_330 Hb_001140_330 Hb_000213_130--Hb_001140_330 Hb_005120_010 Hb_005120_010 Hb_000213_130--Hb_005120_010 Hb_001040_190 Hb_001040_190 Hb_000213_130--Hb_001040_190 Hb_005433_050 Hb_005433_050 Hb_012506_080--Hb_005433_050 Hb_000388_160 Hb_000388_160 Hb_012506_080--Hb_000388_160 Hb_000203_240 Hb_000203_240 Hb_012506_080--Hb_000203_240 Hb_002835_020 Hb_002835_020 Hb_012506_080--Hb_002835_020 Hb_012506_080--Hb_004267_050 Hb_039363_010 Hb_039363_010 Hb_012506_080--Hb_039363_010 Hb_004190_030 Hb_004190_030 Hb_004267_050--Hb_004190_030 Hb_004267_050--Hb_001140_330 Hb_003119_110 Hb_003119_110 Hb_004267_050--Hb_003119_110 Hb_000563_060 Hb_000563_060 Hb_004267_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_004267_050--Hb_002944_020 Hb_010358_010 Hb_010358_010 Hb_004267_050--Hb_010358_010 Hb_002553_170 Hb_002553_170 Hb_022250_050--Hb_002553_170 Hb_022250_050--Hb_001040_190 Hb_001930_060 Hb_001930_060 Hb_022250_050--Hb_001930_060 Hb_022250_050--Hb_002835_020 Hb_001301_020 Hb_001301_020 Hb_022250_050--Hb_001301_020 Hb_022250_050--Hb_001140_330 Hb_001140_330--Hb_004190_030 Hb_001140_330--Hb_000563_060 Hb_001140_330--Hb_003119_110 Hb_001140_330--Hb_002835_020 Hb_153208_010 Hb_153208_010 Hb_001140_330--Hb_153208_010 Hb_000329_160 Hb_000329_160 Hb_005120_010--Hb_000329_160 Hb_058620_040 Hb_058620_040 Hb_005120_010--Hb_058620_040 Hb_000141_070 Hb_000141_070 Hb_005120_010--Hb_000141_070 Hb_005120_010--Hb_003119_110 Hb_003334_080 Hb_003334_080 Hb_005120_010--Hb_003334_080 Hb_005120_010--Hb_002553_170 Hb_001040_190--Hb_058620_040 Hb_001040_190--Hb_002553_170 Hb_001040_190--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_001040_190--Hb_058620_050 Hb_001040_190--Hb_000141_070 Hb_004693_010 Hb_004693_010 Hb_001040_190--Hb_004693_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141255 0.381352 0.299508 0.949706 1.34095 0.351557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29431 2.0359 1.34751 111.23 0

CAGE analysis