Hb_005120_010

Information

Type -
Description -
Location Contig5120: 25827-29125
Sequence    

Annotation

kegg
ID rcu:RCOM_0615340
description amino acid transporter, putative
nr
ID XP_002528416.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9SX98
description Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1
trembl
ID B9SQZ7
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0615340 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46370: 25816-29102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005120_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000329_160 0.0622025407 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
3 Hb_058620_040 0.068380806 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
4 Hb_000141_070 0.073273901 - - l-lactate dehydrogenase, putative [Ricinus communis]
5 Hb_003119_110 0.0744348936 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
6 Hb_003334_080 0.0750594056 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_002553_170 0.0751556018 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
8 Hb_058620_050 0.07585676 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
9 Hb_001040_190 0.0773685693 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
10 Hb_000563_060 0.0786918147 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
11 Hb_002835_020 0.0795256518 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
12 Hb_001456_040 0.0818761907 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
13 Hb_001140_330 0.082143561 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
14 Hb_006925_010 0.0852293169 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
15 Hb_004057_050 0.0859720452 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
16 Hb_019392_010 0.08625869 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
17 Hb_000086_710 0.0876909671 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
18 Hb_009026_040 0.0886626744 - - pathogenesis-related family protein [Populus trichocarpa]
19 Hb_004190_030 0.0888371131 - - unnamed protein product [Vitis vinifera]
20 Hb_004267_050 0.0897969658 - - hypothetical protein JCGZ_04357 [Jatropha curcas]

Gene co-expression network

sample Hb_005120_010 Hb_005120_010 Hb_000329_160 Hb_000329_160 Hb_005120_010--Hb_000329_160 Hb_058620_040 Hb_058620_040 Hb_005120_010--Hb_058620_040 Hb_000141_070 Hb_000141_070 Hb_005120_010--Hb_000141_070 Hb_003119_110 Hb_003119_110 Hb_005120_010--Hb_003119_110 Hb_003334_080 Hb_003334_080 Hb_005120_010--Hb_003334_080 Hb_002553_170 Hb_002553_170 Hb_005120_010--Hb_002553_170 Hb_006925_010 Hb_006925_010 Hb_000329_160--Hb_006925_010 Hb_004057_050 Hb_004057_050 Hb_000329_160--Hb_004057_050 Hb_019392_010 Hb_019392_010 Hb_000329_160--Hb_019392_010 Hb_148986_010 Hb_148986_010 Hb_000329_160--Hb_148986_010 Hb_080238_010 Hb_080238_010 Hb_000329_160--Hb_080238_010 Hb_000086_710 Hb_000086_710 Hb_000329_160--Hb_000086_710 Hb_058620_050 Hb_058620_050 Hb_058620_040--Hb_058620_050 Hb_058620_040--Hb_003334_080 Hb_058620_040--Hb_000141_070 Hb_004693_010 Hb_004693_010 Hb_058620_040--Hb_004693_010 Hb_058620_040--Hb_006925_010 Hb_058620_040--Hb_000086_710 Hb_000141_070--Hb_003334_080 Hb_000141_070--Hb_058620_050 Hb_009568_010 Hb_009568_010 Hb_000141_070--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_000141_070--Hb_007483_040 Hb_001456_040 Hb_001456_040 Hb_000141_070--Hb_001456_040 Hb_004190_030 Hb_004190_030 Hb_003119_110--Hb_004190_030 Hb_000563_060 Hb_000563_060 Hb_003119_110--Hb_000563_060 Hb_001140_330 Hb_001140_330 Hb_003119_110--Hb_001140_330 Hb_004267_050 Hb_004267_050 Hb_003119_110--Hb_004267_050 Hb_002835_020 Hb_002835_020 Hb_003119_110--Hb_002835_020 Hb_039363_010 Hb_039363_010 Hb_003119_110--Hb_039363_010 Hb_003334_080--Hb_009568_010 Hb_003334_080--Hb_002835_020 Hb_003334_080--Hb_002553_170 Hb_003334_080--Hb_058620_050 Hb_001930_060 Hb_001930_060 Hb_002553_170--Hb_001930_060 Hb_002553_170--Hb_002835_020 Hb_002553_170--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_002553_170--Hb_003188_020 Hb_002553_170--Hb_000141_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0547172 0.174909 0.082677 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0228087 0.0179465 0.0340234 9.75401 0.0379168

CAGE analysis