Hb_058620_040

Information

Type -
Description -
Location Contig58620: 57127-59846
Sequence    

Annotation

kegg
ID tcc:TCM_001338
description Myrcene synthase, chloroplastic, putative isoform 1
nr
ID XP_007048226.1
description Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
swissprot
ID I6RE61
description (E)-beta-ocimene synthase, chloroplastic OS=Matricaria chamomilla var. recutita PE=1 SV=1
trembl
ID A0A061DQZ8
description Myrcene synthase, chloroplastic, putative isoform 1 OS=Theobroma cacao GN=TCM_001338 PE=4 SV=1
Gene Ontology
ID GO:0009536
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49983: 59256-59764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058620_040 0.0 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
2 Hb_058620_050 0.020985638 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
3 Hb_003334_080 0.0408109122 - - Reticuline oxidase precursor, putative [Ricinus communis]
4 Hb_000141_070 0.044517023 - - l-lactate dehydrogenase, putative [Ricinus communis]
5 Hb_004693_010 0.0540060566 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
6 Hb_006925_010 0.0589836638 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
7 Hb_000086_710 0.0620428138 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
8 Hb_000329_160 0.062298141 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
9 Hb_009568_010 0.0670164271 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
10 Hb_001040_190 0.0676807524 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
11 Hb_019392_010 0.0678984033 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
12 Hb_005120_010 0.068380806 - - amino acid transporter, putative [Ricinus communis]
13 Hb_007483_040 0.0688931701 - - PREDICTED: protein SRG1-like [Jatropha curcas]
14 Hb_002835_020 0.071244858 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
15 Hb_004057_050 0.0718565382 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
16 Hb_000221_200 0.073463157 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
17 Hb_002553_170 0.0736817228 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
18 Hb_148986_010 0.0738678124 - - unnamed protein product [Vitis vinifera]
19 Hb_039363_010 0.0772800072 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
20 Hb_000958_180 0.0781257534 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_058620_040 Hb_058620_040 Hb_058620_050 Hb_058620_050 Hb_058620_040--Hb_058620_050 Hb_003334_080 Hb_003334_080 Hb_058620_040--Hb_003334_080 Hb_000141_070 Hb_000141_070 Hb_058620_040--Hb_000141_070 Hb_004693_010 Hb_004693_010 Hb_058620_040--Hb_004693_010 Hb_006925_010 Hb_006925_010 Hb_058620_040--Hb_006925_010 Hb_000086_710 Hb_000086_710 Hb_058620_040--Hb_000086_710 Hb_058620_050--Hb_000141_070 Hb_058620_050--Hb_003334_080 Hb_058620_050--Hb_004693_010 Hb_009568_010 Hb_009568_010 Hb_058620_050--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_058620_050--Hb_007483_040 Hb_003334_080--Hb_000141_070 Hb_003334_080--Hb_009568_010 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_000141_070--Hb_009568_010 Hb_000141_070--Hb_007483_040 Hb_001456_040 Hb_001456_040 Hb_000141_070--Hb_001456_040 Hb_000712_070 Hb_000712_070 Hb_004693_010--Hb_000712_070 Hb_004693_010--Hb_000141_070 Hb_004693_010--Hb_003334_080 Hb_000318_440 Hb_000318_440 Hb_004693_010--Hb_000318_440 Hb_148986_010 Hb_148986_010 Hb_006925_010--Hb_148986_010 Hb_019392_010 Hb_019392_010 Hb_006925_010--Hb_019392_010 Hb_001266_110 Hb_001266_110 Hb_006925_010--Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_006925_010--Hb_003334_020 Hb_080238_010 Hb_080238_010 Hb_006925_010--Hb_080238_010 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_000086_710--Hb_001266_110 Hb_004057_050 Hb_004057_050 Hb_000086_710--Hb_004057_050 Hb_000086_710--Hb_003334_020 Hb_000086_710--Hb_019392_010 Hb_000086_710--Hb_006925_010 Hb_000086_710--Hb_148986_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0684764 0.249027 0.242775 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.6684 0.0729302

CAGE analysis