Hb_012506_080

Information

Type -
Description -
Location Contig12506: 102434-108292
Sequence    

Annotation

kegg
ID rcu:RCOM_1186160
description amino acid transporter, putative
nr
ID XP_002527443.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID F4HW02
description GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1
trembl
ID B9SN74
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1186160 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gaba transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012506_080 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_005433_050 0.0721592046 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
3 Hb_000388_160 0.0788836299 - - xyloglucan endo-1 family protein [Populus trichocarpa]
4 Hb_000203_240 0.0803303787 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002835_020 0.0833548977 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
6 Hb_004267_050 0.0880247721 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
7 Hb_039363_010 0.0894631216 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_001140_330 0.0896180305 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
9 Hb_000563_060 0.0900957202 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
10 Hb_002944_020 0.0905317022 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
11 Hb_000229_080 0.0928481479 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
12 Hb_058620_010 0.0941600499 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000500_190 0.0947307094 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
14 Hb_009780_060 0.0955055766 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
15 Hb_000828_030 0.0964093874 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
16 Hb_153208_010 0.0968678665 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
17 Hb_004190_030 0.0971705042 - - unnamed protein product [Vitis vinifera]
18 Hb_010358_010 0.0979274423 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_000445_020 0.0983163157 - - GABA-specific permease, putative [Ricinus communis]
20 Hb_003188_020 0.0986243384 - - chitinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012506_080 Hb_012506_080 Hb_005433_050 Hb_005433_050 Hb_012506_080--Hb_005433_050 Hb_000388_160 Hb_000388_160 Hb_012506_080--Hb_000388_160 Hb_000203_240 Hb_000203_240 Hb_012506_080--Hb_000203_240 Hb_002835_020 Hb_002835_020 Hb_012506_080--Hb_002835_020 Hb_004267_050 Hb_004267_050 Hb_012506_080--Hb_004267_050 Hb_039363_010 Hb_039363_010 Hb_012506_080--Hb_039363_010 Hb_005433_050--Hb_000203_240 Hb_106528_020 Hb_106528_020 Hb_005433_050--Hb_106528_020 Hb_010358_010 Hb_010358_010 Hb_005433_050--Hb_010358_010 Hb_000563_060 Hb_000563_060 Hb_005433_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_005433_050--Hb_002944_020 Hb_000229_080 Hb_000229_080 Hb_005433_050--Hb_000229_080 Hb_000388_160--Hb_039363_010 Hb_000388_160--Hb_002835_020 Hb_000388_160--Hb_000563_060 Hb_153208_010 Hb_153208_010 Hb_000388_160--Hb_153208_010 Hb_109163_010 Hb_109163_010 Hb_000388_160--Hb_109163_010 Hb_003334_080 Hb_003334_080 Hb_000388_160--Hb_003334_080 Hb_000203_240--Hb_002944_020 Hb_000203_240--Hb_000229_080 Hb_000203_240--Hb_106528_020 Hb_004190_030 Hb_004190_030 Hb_000203_240--Hb_004190_030 Hb_000203_240--Hb_000563_060 Hb_002835_020--Hb_039363_010 Hb_002835_020--Hb_000563_060 Hb_002553_170 Hb_002553_170 Hb_002835_020--Hb_002553_170 Hb_002835_020--Hb_003334_080 Hb_001930_060 Hb_001930_060 Hb_002835_020--Hb_001930_060 Hb_004267_050--Hb_004190_030 Hb_001140_330 Hb_001140_330 Hb_004267_050--Hb_001140_330 Hb_003119_110 Hb_003119_110 Hb_004267_050--Hb_003119_110 Hb_004267_050--Hb_000563_060 Hb_004267_050--Hb_002944_020 Hb_004267_050--Hb_010358_010 Hb_039363_010--Hb_000563_060 Hb_039363_010--Hb_109163_010 Hb_039363_010--Hb_153208_010 Hb_039363_010--Hb_004190_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232878 0.394868 0.0720378 0.120463 0.0342288 0.0114064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529831 0.104216 0 16.3021 0.0876935

CAGE analysis