Hb_002876_310

Information

Type -
Description -
Location Contig2876: 289849-293590
Sequence    

Annotation

kegg
ID vvi:100260649
description caffeic acid 3-O-methyltransferase-like
nr
ID KDP47104.1
description hypothetical protein JCGZ_03912 [Jatropha curcas]
swissprot
ID Q43609
description Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
trembl
ID A0A067LR65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03912 PE=4 SV=1
Gene Ontology
ID GO:0044464
description caffeic acid 3-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_310 0.0 - - hypothetical protein JCGZ_03912 [Jatropha curcas]
2 Hb_002570_020 0.0952281714 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
3 Hb_002249_180 0.1185729486 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_001948_040 0.1328445478 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
5 Hb_004503_010 0.1342066448 - - PREDICTED: EG45-like domain containing protein [Prunus mume]
6 Hb_000712_060 0.137900256 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
7 Hb_009026_040 0.1393132709 - - pathogenesis-related family protein [Populus trichocarpa]
8 Hb_000679_070 0.1417958766 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
9 Hb_000828_020 0.1477151333 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
10 Hb_023732_020 0.1542399211 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
11 Hb_022115_030 0.1559309092 - - PREDICTED: umecyanin-like [Jatropha curcas]
12 Hb_012707_050 0.1578345797 - - hypothetical protein RCOM_1341590 [Ricinus communis]
13 Hb_000221_200 0.1584007076 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
14 Hb_005171_060 0.1587987607 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_000120_700 0.1592594117 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_000008_130 0.1648040212 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
17 Hb_000013_040 0.1648040212 - - -
18 Hb_000013_070 0.1648040212 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000014_180 0.1648040212 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
20 Hb_000021_080 0.1648040212 - - -

Gene co-expression network

sample Hb_002876_310 Hb_002876_310 Hb_002570_020 Hb_002570_020 Hb_002876_310--Hb_002570_020 Hb_002249_180 Hb_002249_180 Hb_002876_310--Hb_002249_180 Hb_001948_040 Hb_001948_040 Hb_002876_310--Hb_001948_040 Hb_004503_010 Hb_004503_010 Hb_002876_310--Hb_004503_010 Hb_000712_060 Hb_000712_060 Hb_002876_310--Hb_000712_060 Hb_009026_040 Hb_009026_040 Hb_002876_310--Hb_009026_040 Hb_002570_020--Hb_001948_040 Hb_002570_020--Hb_009026_040 Hb_000679_070 Hb_000679_070 Hb_002570_020--Hb_000679_070 Hb_002570_020--Hb_000712_060 Hb_000828_020 Hb_000828_020 Hb_002570_020--Hb_000828_020 Hb_002249_180--Hb_000828_020 Hb_002249_180--Hb_009026_040 Hb_002249_180--Hb_001948_040 Hb_003073_020 Hb_003073_020 Hb_002249_180--Hb_003073_020 Hb_039363_010 Hb_039363_010 Hb_002249_180--Hb_039363_010 Hb_004267_050 Hb_004267_050 Hb_002249_180--Hb_004267_050 Hb_001948_040--Hb_009026_040 Hb_001948_040--Hb_000828_020 Hb_000221_200 Hb_000221_200 Hb_001948_040--Hb_000221_200 Hb_001948_040--Hb_000712_060 Hb_080238_010 Hb_080238_010 Hb_001948_040--Hb_080238_010 Hb_039791_010 Hb_039791_010 Hb_004503_010--Hb_039791_010 Hb_004503_010--Hb_002570_020 Hb_005171_060 Hb_005171_060 Hb_004503_010--Hb_005171_060 Hb_004503_010--Hb_000712_060 Hb_023732_020 Hb_023732_020 Hb_004503_010--Hb_023732_020 Hb_000712_060--Hb_000828_020 Hb_000712_060--Hb_023732_020 Hb_000712_060--Hb_009026_040 Hb_000712_060--Hb_000221_200 Hb_000712_060--Hb_003073_020 Hb_009026_040--Hb_080238_010 Hb_009026_040--Hb_000828_020 Hb_009026_040--Hb_000221_200 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0328293 0 1.78935 0.067851

CAGE analysis