Hb_000828_020

Information

Type -
Description -
Location Contig828: 46280-57430
Sequence    

Annotation

kegg
ID rcu:RCOM_0226100
description short chain alcohol dehydrogenase, putative (EC:1.1.1.53)
nr
ID XP_012087518.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID P42317
description Uncharacterized oxidoreductase YxjF OS=Bacillus subtilis (strain 168) GN=yxjF PE=3 SV=2
trembl
ID A0A067JMA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24000 PE=3 SV=1
Gene Ontology
ID GO:0047044
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59749: 56985-57284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000828_020 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_000221_200 0.0493095927 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
3 Hb_001948_040 0.0516963798 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
4 Hb_000712_060 0.053303128 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
5 Hb_009026_040 0.0585246763 - - pathogenesis-related family protein [Populus trichocarpa]
6 Hb_003073_020 0.0693123636 - - protein binding protein, putative [Ricinus communis]
7 Hb_002249_180 0.0696038543 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_039363_010 0.0712908153 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_002835_020 0.0803716684 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
10 Hb_023732_020 0.0845765155 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
11 Hb_004267_050 0.0863898207 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
12 Hb_004057_050 0.0896056091 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
13 Hb_000388_160 0.0900325994 - - xyloglucan endo-1 family protein [Populus trichocarpa]
14 Hb_109163_010 0.0904405649 - - polyphenol oxidase [Hevea brasiliensis]
15 Hb_000563_060 0.0906516132 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
16 Hb_080238_010 0.091350692 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_004190_030 0.0957859496 - - unnamed protein product [Vitis vinifera]
18 Hb_058620_040 0.0961304572 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
19 Hb_003119_110 0.0972790504 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
20 Hb_000699_060 0.0991860023 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]

Gene co-expression network

sample Hb_000828_020 Hb_000828_020 Hb_000221_200 Hb_000221_200 Hb_000828_020--Hb_000221_200 Hb_001948_040 Hb_001948_040 Hb_000828_020--Hb_001948_040 Hb_000712_060 Hb_000712_060 Hb_000828_020--Hb_000712_060 Hb_009026_040 Hb_009026_040 Hb_000828_020--Hb_009026_040 Hb_003073_020 Hb_003073_020 Hb_000828_020--Hb_003073_020 Hb_002249_180 Hb_002249_180 Hb_000828_020--Hb_002249_180 Hb_000221_200--Hb_001948_040 Hb_000221_200--Hb_009026_040 Hb_000699_060 Hb_000699_060 Hb_000221_200--Hb_000699_060 Hb_058620_040 Hb_058620_040 Hb_000221_200--Hb_058620_040 Hb_039363_010 Hb_039363_010 Hb_000221_200--Hb_039363_010 Hb_001948_040--Hb_009026_040 Hb_001948_040--Hb_000712_060 Hb_080238_010 Hb_080238_010 Hb_001948_040--Hb_080238_010 Hb_001948_040--Hb_002249_180 Hb_023732_020 Hb_023732_020 Hb_000712_060--Hb_023732_020 Hb_000712_060--Hb_009026_040 Hb_000712_060--Hb_000221_200 Hb_000712_060--Hb_003073_020 Hb_009026_040--Hb_080238_010 Hb_009026_040--Hb_002249_180 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_032717_030 Hb_032717_030 Hb_003073_020--Hb_032717_030 Hb_003073_020--Hb_023732_020 Hb_003073_020--Hb_039363_010 Hb_002835_020 Hb_002835_020 Hb_003073_020--Hb_002835_020 Hb_005433_050 Hb_005433_050 Hb_003073_020--Hb_005433_050 Hb_002249_180--Hb_003073_020 Hb_002249_180--Hb_039363_010 Hb_004267_050 Hb_004267_050 Hb_002249_180--Hb_004267_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0477262 0.00630463 0.106975 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.019312 0 0 9.86032 0.128953

CAGE analysis