Hb_001948_040

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig1948: 44864-45595
Sequence    

Annotation

kegg
ID rcu:RCOM_0013160
description geranyl geranyl pyrophosphate synthase, putative (EC:1.3.1.74)
nr
ID XP_002531191.1
description geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
swissprot
ID Q94ID7
description Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1
trembl
ID B9SYX2
description Geranyl geranyl pyrophosphate synthase, putative OS=Ricinus communis GN=RCOM_0013160 PE=3 SV=1
Gene Ontology
ID GO:0004311
description geranylgeranyl pyrophosphate synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001948_040 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
2 Hb_009026_040 0.0265225514 - - pathogenesis-related family protein [Populus trichocarpa]
3 Hb_000828_020 0.0516963798 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_000221_200 0.0550004529 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
5 Hb_000712_060 0.06578115 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
6 Hb_080238_010 0.0664659645 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_002249_180 0.0707817015 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_039363_010 0.076419866 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_000679_070 0.0783350072 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
10 Hb_004057_050 0.0804237634 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
11 Hb_000329_160 0.0832064975 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
12 Hb_002570_020 0.0840056888 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
13 Hb_001266_090 0.085521265 - - -
14 Hb_006925_010 0.0867464928 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
15 Hb_058620_040 0.0882652128 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
16 Hb_000563_060 0.0892506179 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
17 Hb_002835_020 0.0896417783 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
18 Hb_003119_110 0.0899439757 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
19 Hb_003073_020 0.0921732153 - - protein binding protein, putative [Ricinus communis]
20 Hb_000388_160 0.0924651276 - - xyloglucan endo-1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001948_040 Hb_001948_040 Hb_009026_040 Hb_009026_040 Hb_001948_040--Hb_009026_040 Hb_000828_020 Hb_000828_020 Hb_001948_040--Hb_000828_020 Hb_000221_200 Hb_000221_200 Hb_001948_040--Hb_000221_200 Hb_000712_060 Hb_000712_060 Hb_001948_040--Hb_000712_060 Hb_080238_010 Hb_080238_010 Hb_001948_040--Hb_080238_010 Hb_002249_180 Hb_002249_180 Hb_001948_040--Hb_002249_180 Hb_009026_040--Hb_080238_010 Hb_009026_040--Hb_000828_020 Hb_009026_040--Hb_000221_200 Hb_009026_040--Hb_002249_180 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_000828_020--Hb_000221_200 Hb_000828_020--Hb_000712_060 Hb_003073_020 Hb_003073_020 Hb_000828_020--Hb_003073_020 Hb_000828_020--Hb_002249_180 Hb_000699_060 Hb_000699_060 Hb_000221_200--Hb_000699_060 Hb_058620_040 Hb_058620_040 Hb_000221_200--Hb_058620_040 Hb_039363_010 Hb_039363_010 Hb_000221_200--Hb_039363_010 Hb_023732_020 Hb_023732_020 Hb_000712_060--Hb_023732_020 Hb_000712_060--Hb_009026_040 Hb_000712_060--Hb_000221_200 Hb_000712_060--Hb_003073_020 Hb_006925_010 Hb_006925_010 Hb_080238_010--Hb_006925_010 Hb_003334_020 Hb_003334_020 Hb_080238_010--Hb_003334_020 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_004057_050 Hb_004057_050 Hb_080238_010--Hb_004057_050 Hb_000684_060 Hb_000684_060 Hb_080238_010--Hb_000684_060 Hb_001266_110 Hb_001266_110 Hb_080238_010--Hb_001266_110 Hb_002249_180--Hb_003073_020 Hb_002249_180--Hb_039363_010 Hb_004267_050 Hb_004267_050 Hb_002249_180--Hb_004267_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.066838 0.102643 0.18196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 34.6565 0.47563

CAGE analysis