Hb_003073_020

Information

Type -
Description -
Location Contig3073: 6069-6983
Sequence    

Annotation

kegg
ID rcu:RCOM_1206820
description protein binding protein, putative
nr
ID XP_002530848.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXZ1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1206820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_020 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_032717_030 0.0486177316 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
3 Hb_023732_020 0.0574263077 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
4 Hb_039363_010 0.0646188814 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_000828_020 0.0693123636 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_002835_020 0.0741618997 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
7 Hb_005433_050 0.0777592104 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
8 Hb_023080_010 0.0784195057 - - PREDICTED: probable serine incorporator [Jatropha curcas]
9 Hb_002249_180 0.0785485838 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
10 Hb_000388_160 0.0823071157 - - xyloglucan endo-1 family protein [Populus trichocarpa]
11 Hb_000221_200 0.0838344529 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
12 Hb_000712_060 0.0855474681 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
13 Hb_022115_030 0.0856630593 - - PREDICTED: umecyanin-like [Jatropha curcas]
14 Hb_000563_060 0.0870298121 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
15 Hb_002758_020 0.0874983111 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
16 Hb_001948_040 0.0921732153 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
17 Hb_153208_010 0.092298595 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
18 Hb_038238_010 0.0924033438 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
19 Hb_000828_030 0.0926214926 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_004097_080 0.0937820215 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_003073_020 Hb_003073_020 Hb_032717_030 Hb_032717_030 Hb_003073_020--Hb_032717_030 Hb_023732_020 Hb_023732_020 Hb_003073_020--Hb_023732_020 Hb_039363_010 Hb_039363_010 Hb_003073_020--Hb_039363_010 Hb_000828_020 Hb_000828_020 Hb_003073_020--Hb_000828_020 Hb_002835_020 Hb_002835_020 Hb_003073_020--Hb_002835_020 Hb_005433_050 Hb_005433_050 Hb_003073_020--Hb_005433_050 Hb_032717_030--Hb_005433_050 Hb_022115_030 Hb_022115_030 Hb_032717_030--Hb_022115_030 Hb_020141_020 Hb_020141_020 Hb_032717_030--Hb_020141_020 Hb_100786_010 Hb_100786_010 Hb_032717_030--Hb_100786_010 Hb_000828_030 Hb_000828_030 Hb_032717_030--Hb_000828_030 Hb_023080_010 Hb_023080_010 Hb_023732_020--Hb_023080_010 Hb_000712_060 Hb_000712_060 Hb_023732_020--Hb_000712_060 Hb_023732_020--Hb_000828_020 Hb_023732_020--Hb_032717_030 Hb_039562_010 Hb_039562_010 Hb_023732_020--Hb_039562_010 Hb_039363_010--Hb_002835_020 Hb_000563_060 Hb_000563_060 Hb_039363_010--Hb_000563_060 Hb_000388_160 Hb_000388_160 Hb_039363_010--Hb_000388_160 Hb_109163_010 Hb_109163_010 Hb_039363_010--Hb_109163_010 Hb_153208_010 Hb_153208_010 Hb_039363_010--Hb_153208_010 Hb_004190_030 Hb_004190_030 Hb_039363_010--Hb_004190_030 Hb_000221_200 Hb_000221_200 Hb_000828_020--Hb_000221_200 Hb_001948_040 Hb_001948_040 Hb_000828_020--Hb_001948_040 Hb_000828_020--Hb_000712_060 Hb_009026_040 Hb_009026_040 Hb_000828_020--Hb_009026_040 Hb_002249_180 Hb_002249_180 Hb_000828_020--Hb_002249_180 Hb_002835_020--Hb_000563_060 Hb_002553_170 Hb_002553_170 Hb_002835_020--Hb_002553_170 Hb_002835_020--Hb_000388_160 Hb_003334_080 Hb_003334_080 Hb_002835_020--Hb_003334_080 Hb_001930_060 Hb_001930_060 Hb_002835_020--Hb_001930_060 Hb_000203_240 Hb_000203_240 Hb_005433_050--Hb_000203_240 Hb_106528_020 Hb_106528_020 Hb_005433_050--Hb_106528_020 Hb_010358_010 Hb_010358_010 Hb_005433_050--Hb_010358_010 Hb_005433_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_005433_050--Hb_002944_020 Hb_000229_080 Hb_000229_080 Hb_005433_050--Hb_000229_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.570942 0 0.334447 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 28.0624 0.362257

CAGE analysis