Hb_000828_030

Information

Type -
Description -
Location Contig828: 60880-62302
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07480g
description POPTRDRAFT_576542; alcohol dehydroge family protein
nr
ID XP_012074369.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL8
description Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1
trembl
ID A0A067KV61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08799 PE=4 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000828_030 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_020141_020 0.0576443046 - - -
3 Hb_010358_010 0.0631303299 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
4 Hb_106528_020 0.0640456049 - - Cationic peroxidase 2 precursor [Theobroma cacao]
5 Hb_153208_010 0.0660558946 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
6 Hb_005433_050 0.0688027125 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
7 Hb_038238_010 0.0696473965 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
8 Hb_187247_010 0.0734755124 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
9 Hb_007337_010 0.0734945577 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
10 Hb_143766_040 0.073624072 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
11 Hb_004981_020 0.0739698828 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
12 Hb_002944_020 0.0753933259 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
13 Hb_003188_020 0.0754570546 - - chitinase, putative [Ricinus communis]
14 Hb_061590_010 0.0755468964 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
15 Hb_005726_030 0.0758702454 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
16 Hb_028013_010 0.0761259847 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_032717_030 0.076934621 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
18 Hb_014034_020 0.0771716023 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
19 Hb_039363_010 0.0780567434 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
20 Hb_001140_330 0.079450296 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]

Gene co-expression network

sample Hb_000828_030 Hb_000828_030 Hb_020141_020 Hb_020141_020 Hb_000828_030--Hb_020141_020 Hb_010358_010 Hb_010358_010 Hb_000828_030--Hb_010358_010 Hb_106528_020 Hb_106528_020 Hb_000828_030--Hb_106528_020 Hb_153208_010 Hb_153208_010 Hb_000828_030--Hb_153208_010 Hb_005433_050 Hb_005433_050 Hb_000828_030--Hb_005433_050 Hb_038238_010 Hb_038238_010 Hb_000828_030--Hb_038238_010 Hb_018709_010 Hb_018709_010 Hb_020141_020--Hb_018709_010 Hb_000563_080 Hb_000563_080 Hb_020141_020--Hb_000563_080 Hb_003188_020 Hb_003188_020 Hb_020141_020--Hb_003188_020 Hb_020141_020--Hb_010358_010 Hb_020141_020--Hb_153208_010 Hb_014034_020 Hb_014034_020 Hb_020141_020--Hb_014034_020 Hb_002944_020 Hb_002944_020 Hb_010358_010--Hb_002944_020 Hb_010358_010--Hb_153208_010 Hb_010358_010--Hb_106528_020 Hb_010358_010--Hb_038238_010 Hb_004190_030 Hb_004190_030 Hb_010358_010--Hb_004190_030 Hb_106528_020--Hb_038238_010 Hb_005726_030 Hb_005726_030 Hb_106528_020--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_106528_020--Hb_061590_010 Hb_187247_010 Hb_187247_010 Hb_106528_020--Hb_187247_010 Hb_106528_020--Hb_153208_010 Hb_153208_010--Hb_003188_020 Hb_153208_010--Hb_002944_020 Hb_109163_010 Hb_109163_010 Hb_153208_010--Hb_109163_010 Hb_153208_010--Hb_014034_020 Hb_000563_060 Hb_000563_060 Hb_153208_010--Hb_000563_060 Hb_000203_240 Hb_000203_240 Hb_005433_050--Hb_000203_240 Hb_005433_050--Hb_106528_020 Hb_005433_050--Hb_010358_010 Hb_005433_050--Hb_000563_060 Hb_005433_050--Hb_002944_020 Hb_000229_080 Hb_000229_080 Hb_005433_050--Hb_000229_080 Hb_007437_010 Hb_007437_010 Hb_038238_010--Hb_007437_010 Hb_038238_010--Hb_005726_030 Hb_038238_010--Hb_061590_010 Hb_006415_020 Hb_006415_020 Hb_038238_010--Hb_006415_020 Hb_038238_010--Hb_187247_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0257651 2.78359 0.0819248 0.425521 0 0.386578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 91.0356 0.0942471

CAGE analysis