Hb_000699_060

Information

Type -
Description -
Location Contig699: 61431-61664
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03180g
description hypothetical protein
nr
ID XP_006371067.1
description hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FFD1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s03180g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_060 0.0 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
2 Hb_001546_090 0.0679773098 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
3 Hb_001948_020 0.0691580002 - - -
4 Hb_000221_200 0.0732744956 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
5 Hb_036291_010 0.0766394429 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
6 Hb_033865_020 0.0769350779 - - -
7 Hb_005066_010 0.0788285595 - - FAD-binding domain-containing family protein [Populus trichocarpa]
8 Hb_073973_050 0.0835627386 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
9 Hb_000948_040 0.085244962 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
10 Hb_090894_010 0.086311354 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
11 Hb_007845_020 0.0912366831 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
12 Hb_000828_020 0.0991860023 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
13 Hb_000315_110 0.1041878134 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
14 Hb_000205_290 0.104240925 - - -
15 Hb_004693_010 0.1093830399 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
16 Hb_001266_110 0.1097950492 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004057_050 0.1100495626 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
18 Hb_000958_180 0.1119396083 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
19 Hb_000318_440 0.1121685081 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
20 Hb_001948_040 0.1140939744 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000699_060 Hb_000699_060 Hb_001546_090 Hb_001546_090 Hb_000699_060--Hb_001546_090 Hb_001948_020 Hb_001948_020 Hb_000699_060--Hb_001948_020 Hb_000221_200 Hb_000221_200 Hb_000699_060--Hb_000221_200 Hb_036291_010 Hb_036291_010 Hb_000699_060--Hb_036291_010 Hb_033865_020 Hb_033865_020 Hb_000699_060--Hb_033865_020 Hb_005066_010 Hb_005066_010 Hb_000699_060--Hb_005066_010 Hb_001546_090--Hb_001948_020 Hb_001546_090--Hb_033865_020 Hb_001546_090--Hb_005066_010 Hb_001546_090--Hb_036291_010 Hb_000948_040 Hb_000948_040 Hb_001546_090--Hb_000948_040 Hb_073973_050 Hb_073973_050 Hb_001546_090--Hb_073973_050 Hb_001948_020--Hb_036291_010 Hb_001948_020--Hb_073973_050 Hb_090894_010 Hb_090894_010 Hb_001948_020--Hb_090894_010 Hb_007845_020 Hb_007845_020 Hb_001948_020--Hb_007845_020 Hb_001948_020--Hb_033865_020 Hb_000828_020 Hb_000828_020 Hb_000221_200--Hb_000828_020 Hb_001948_040 Hb_001948_040 Hb_000221_200--Hb_001948_040 Hb_009026_040 Hb_009026_040 Hb_000221_200--Hb_009026_040 Hb_058620_040 Hb_058620_040 Hb_000221_200--Hb_058620_040 Hb_039363_010 Hb_039363_010 Hb_000221_200--Hb_039363_010 Hb_036291_010--Hb_073973_050 Hb_036291_010--Hb_090894_010 Hb_036291_010--Hb_007845_020 Hb_001266_110 Hb_001266_110 Hb_036291_010--Hb_001266_110 Hb_033865_020--Hb_005066_010 Hb_033865_020--Hb_000948_040 Hb_000205_290 Hb_000205_290 Hb_033865_020--Hb_000205_290 Hb_002757_050 Hb_002757_050 Hb_033865_020--Hb_002757_050 Hb_005066_010--Hb_000948_040 Hb_005066_010--Hb_000205_290 Hb_005066_010--Hb_001948_020 Hb_005066_010--Hb_002757_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 6.6605 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 166.842 1.6031

CAGE analysis