Hb_004503_010

Information

Type -
Description -
Location Contig4503: 17145-18125
Sequence    

Annotation

kegg
ID pmum:103323343
description EG45-like domain containing protein
nr
ID XP_008223552.1
description PREDICTED: EG45-like domain containing protein [Prunus mume]
swissprot
ID Q9ZP41
description EG45-like domain containing protein OS=Citrus jambhiri GN=CjBAp12 PE=1 SV=1
trembl
ID M5XFJ4
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013544mg PE=4 SV=1
Gene Ontology
ID GO:0005576
description eg45-like domain containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43175: 17147-17979
cDNA
(Sanger)
(ID:Location)		 045_N01.ab1: 17148-17979

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004503_010 0.0 - - PREDICTED: EG45-like domain containing protein [Prunus mume]
2 Hb_039791_010 0.0938231176 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
3 Hb_002570_020 0.1131273072 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_005171_060 0.1240327213 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_000712_060 0.1320507543 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
6 Hb_002876_310 0.1342066448 - - hypothetical protein JCGZ_03912 [Jatropha curcas]
7 Hb_023732_020 0.1414784521 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
8 Hb_003189_030 0.1431508633 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
9 Hb_000120_700 0.1431674187 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_001948_040 0.1567499677 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
11 Hb_012707_050 0.1586954481 - - hypothetical protein RCOM_1341590 [Ricinus communis]
12 Hb_000679_070 0.1594710953 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
13 Hb_001221_120 0.1615610527 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002890_050 0.1638968738 - - -
15 Hb_014034_010 0.1648184197 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_115414_010 0.164822341 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
17 Hb_001003_020 0.1649189803 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
18 Hb_000828_020 0.1653936264 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_035726_020 0.1659120732 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
20 Hb_002173_080 0.1663185958 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004503_010 Hb_004503_010 Hb_039791_010 Hb_039791_010 Hb_004503_010--Hb_039791_010 Hb_002570_020 Hb_002570_020 Hb_004503_010--Hb_002570_020 Hb_005171_060 Hb_005171_060 Hb_004503_010--Hb_005171_060 Hb_000712_060 Hb_000712_060 Hb_004503_010--Hb_000712_060 Hb_002876_310 Hb_002876_310 Hb_004503_010--Hb_002876_310 Hb_023732_020 Hb_023732_020 Hb_004503_010--Hb_023732_020 Hb_001221_120 Hb_001221_120 Hb_039791_010--Hb_001221_120 Hb_002890_050 Hb_002890_050 Hb_039791_010--Hb_002890_050 Hb_014034_010 Hb_014034_010 Hb_039791_010--Hb_014034_010 Hb_001514_160 Hb_001514_160 Hb_039791_010--Hb_001514_160 Hb_009142_030 Hb_009142_030 Hb_039791_010--Hb_009142_030 Hb_055880_010 Hb_055880_010 Hb_039791_010--Hb_055880_010 Hb_001948_040 Hb_001948_040 Hb_002570_020--Hb_001948_040 Hb_002570_020--Hb_002876_310 Hb_009026_040 Hb_009026_040 Hb_002570_020--Hb_009026_040 Hb_000679_070 Hb_000679_070 Hb_002570_020--Hb_000679_070 Hb_002570_020--Hb_000712_060 Hb_000828_020 Hb_000828_020 Hb_002570_020--Hb_000828_020 Hb_007491_010 Hb_007491_010 Hb_005171_060--Hb_007491_010 Hb_003237_040 Hb_003237_040 Hb_005171_060--Hb_003237_040 Hb_005171_060--Hb_002570_020 Hb_001003_020 Hb_001003_020 Hb_005171_060--Hb_001003_020 Hb_002173_080 Hb_002173_080 Hb_005171_060--Hb_002173_080 Hb_000712_060--Hb_000828_020 Hb_000712_060--Hb_001948_040 Hb_000712_060--Hb_023732_020 Hb_000712_060--Hb_009026_040 Hb_000221_200 Hb_000221_200 Hb_000712_060--Hb_000221_200 Hb_003073_020 Hb_003073_020 Hb_000712_060--Hb_003073_020 Hb_002249_180 Hb_002249_180 Hb_002876_310--Hb_002249_180 Hb_002876_310--Hb_001948_040 Hb_002876_310--Hb_000712_060 Hb_002876_310--Hb_009026_040 Hb_023732_020--Hb_003073_020 Hb_023080_010 Hb_023080_010 Hb_023732_020--Hb_023080_010 Hb_023732_020--Hb_000828_020 Hb_032717_030 Hb_032717_030 Hb_023732_020--Hb_032717_030 Hb_039562_010 Hb_039562_010 Hb_023732_020--Hb_039562_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.34657 0.165975 0.765363 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.280168 0 0.198717 826.921 77.716

CAGE analysis