Hb_002570_020

Information

Type -
Description -
Location Contig2570: 16983-20150
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_012073431.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A067KYW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06105 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lrr receptor-like serine threonine-protein kinase gso1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002570_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_001948_040 0.0840056888 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
3 Hb_002876_310 0.0952281714 - - hypothetical protein JCGZ_03912 [Jatropha curcas]
4 Hb_009026_040 0.0959546244 - - pathogenesis-related family protein [Populus trichocarpa]
5 Hb_000679_070 0.0995648593 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
6 Hb_000712_060 0.0996163924 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
7 Hb_000828_020 0.1058924541 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
8 Hb_002249_180 0.1063878411 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_004503_010 0.1131273072 - - PREDICTED: EG45-like domain containing protein [Prunus mume]
10 Hb_000221_200 0.1203707923 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
11 Hb_000008_130 0.1208736811 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
12 Hb_000013_040 0.1208736811 - - -
13 Hb_000013_070 0.1208736811 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000014_180 0.1208736811 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
15 Hb_000021_080 0.1208736811 - - -
16 Hb_000031_270 0.1208736811 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
17 Hb_000035_070 0.1208736811 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
18 Hb_000041_140 0.1208736811 - - -
19 Hb_000043_130 0.1208736811 - - -
20 Hb_000045_240 0.1208736811 - - -

Gene co-expression network

sample Hb_002570_020 Hb_002570_020 Hb_001948_040 Hb_001948_040 Hb_002570_020--Hb_001948_040 Hb_002876_310 Hb_002876_310 Hb_002570_020--Hb_002876_310 Hb_009026_040 Hb_009026_040 Hb_002570_020--Hb_009026_040 Hb_000679_070 Hb_000679_070 Hb_002570_020--Hb_000679_070 Hb_000712_060 Hb_000712_060 Hb_002570_020--Hb_000712_060 Hb_000828_020 Hb_000828_020 Hb_002570_020--Hb_000828_020 Hb_001948_040--Hb_009026_040 Hb_001948_040--Hb_000828_020 Hb_000221_200 Hb_000221_200 Hb_001948_040--Hb_000221_200 Hb_001948_040--Hb_000712_060 Hb_080238_010 Hb_080238_010 Hb_001948_040--Hb_080238_010 Hb_002249_180 Hb_002249_180 Hb_001948_040--Hb_002249_180 Hb_002876_310--Hb_002249_180 Hb_002876_310--Hb_001948_040 Hb_004503_010 Hb_004503_010 Hb_002876_310--Hb_004503_010 Hb_002876_310--Hb_000712_060 Hb_002876_310--Hb_009026_040 Hb_009026_040--Hb_080238_010 Hb_009026_040--Hb_000828_020 Hb_009026_040--Hb_000221_200 Hb_009026_040--Hb_002249_180 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_003119_110 Hb_003119_110 Hb_000679_070--Hb_003119_110 Hb_000679_070--Hb_009026_040 Hb_000679_070--Hb_001948_040 Hb_000679_070--Hb_000712_060 Hb_004190_030 Hb_004190_030 Hb_000679_070--Hb_004190_030 Hb_000563_060 Hb_000563_060 Hb_000679_070--Hb_000563_060 Hb_000712_060--Hb_000828_020 Hb_023732_020 Hb_023732_020 Hb_000712_060--Hb_023732_020 Hb_000712_060--Hb_009026_040 Hb_000712_060--Hb_000221_200 Hb_003073_020 Hb_003073_020 Hb_000712_060--Hb_003073_020 Hb_000828_020--Hb_000221_200 Hb_000828_020--Hb_003073_020 Hb_000828_020--Hb_002249_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.14312 0.0340374

CAGE analysis