Hb_003038_170

Information

Type -
Description -
Location Contig3038: 100534-100896
Sequence    

Annotation

kegg
ID rcu:RCOM_0535480
description hypothetical protein
nr
ID XP_002521551.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6D2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0535480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_026527_020 0.2674214602 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
3 Hb_138710_010 0.2674271217 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
4 Hb_002798_010 0.270624893 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
5 Hb_094437_060 0.2742338332 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
6 Hb_000032_580 0.2763235247 - - hypothetical protein RCOM_1311780 [Ricinus communis]
7 Hb_001268_130 0.2834404792 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
8 Hb_006922_060 0.288218668 - - calcineurin B, putative [Ricinus communis]
9 Hb_001355_130 0.2901742722 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
10 Hb_003750_030 0.2979536744 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
11 Hb_080147_100 0.2990744311 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
12 Hb_000758_040 0.2995401942 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
13 Hb_000816_120 0.3070686836 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
14 Hb_006420_090 0.3091648749 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
15 Hb_004976_050 0.3143002056 - - -
16 Hb_000805_320 0.3156195586 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
17 Hb_000675_060 0.3170772458 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000251_060 0.3256138307 - - PREDICTED: uncharacterized protein LOC105649757 isoform X2 [Jatropha curcas]
19 Hb_000157_130 0.3264577437 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
20 Hb_002701_190 0.3277890752 - - PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]

Gene co-expression network

sample Hb_003038_170 Hb_003038_170 Hb_026527_020 Hb_026527_020 Hb_003038_170--Hb_026527_020 Hb_138710_010 Hb_138710_010 Hb_003038_170--Hb_138710_010 Hb_002798_010 Hb_002798_010 Hb_003038_170--Hb_002798_010 Hb_094437_060 Hb_094437_060 Hb_003038_170--Hb_094437_060 Hb_000032_580 Hb_000032_580 Hb_003038_170--Hb_000032_580 Hb_001268_130 Hb_001268_130 Hb_003038_170--Hb_001268_130 Hb_006420_090 Hb_006420_090 Hb_026527_020--Hb_006420_090 Hb_007885_050 Hb_007885_050 Hb_026527_020--Hb_007885_050 Hb_026527_020--Hb_001268_130 Hb_011016_010 Hb_011016_010 Hb_026527_020--Hb_011016_010 Hb_000836_490 Hb_000836_490 Hb_026527_020--Hb_000836_490 Hb_001390_030 Hb_001390_030 Hb_138710_010--Hb_001390_030 Hb_138710_010--Hb_094437_060 Hb_004079_080 Hb_004079_080 Hb_138710_010--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_138710_010--Hb_001332_040 Hb_000805_320 Hb_000805_320 Hb_138710_010--Hb_000805_320 Hb_003226_120 Hb_003226_120 Hb_138710_010--Hb_003226_120 Hb_006922_060 Hb_006922_060 Hb_002798_010--Hb_006922_060 Hb_005333_150 Hb_005333_150 Hb_002798_010--Hb_005333_150 Hb_003226_160 Hb_003226_160 Hb_002798_010--Hb_003226_160 Hb_002798_010--Hb_094437_060 Hb_003750_030 Hb_003750_030 Hb_002798_010--Hb_003750_030 Hb_002236_050 Hb_002236_050 Hb_002798_010--Hb_002236_050 Hb_094437_060--Hb_000805_320 Hb_001355_130 Hb_001355_130 Hb_094437_060--Hb_001355_130 Hb_005873_010 Hb_005873_010 Hb_094437_060--Hb_005873_010 Hb_007432_020 Hb_007432_020 Hb_094437_060--Hb_007432_020 Hb_105602_010 Hb_105602_010 Hb_094437_060--Hb_105602_010 Hb_007101_290 Hb_007101_290 Hb_000032_580--Hb_007101_290 Hb_000836_230 Hb_000836_230 Hb_000032_580--Hb_000836_230 Hb_000140_160 Hb_000140_160 Hb_000032_580--Hb_000140_160 Hb_000032_580--Hb_001268_130 Hb_000256_100 Hb_000256_100 Hb_000032_580--Hb_000256_100 Hb_000032_580--Hb_026527_020 Hb_007101_230 Hb_007101_230 Hb_001268_130--Hb_007101_230 Hb_007072_020 Hb_007072_020 Hb_001268_130--Hb_007072_020 Hb_000056_330 Hb_000056_330 Hb_001268_130--Hb_000056_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68329 0.0904882 1.17407 1.54418 0.192021 0.28044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93574 8.36518 0.294351 14.5877 0

CAGE analysis