Hb_003540_020

Information

Type -
Description -
Location Contig3540: 17561-19707
Sequence    

Annotation

kegg
ID rcu:RCOM_1126140
description hypothetical protein
nr
ID XP_002528574.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84WQ5
description CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2
trembl
ID B9SRF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1126140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36689: 17591-18685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000152_780 0.1417654184 - - tonoplast intrinsic protein, putative [Ricinus communis]
3 Hb_000111_430 0.1598921996 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
4 Hb_024494_010 0.1894447103 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
5 Hb_006570_040 0.1949599723 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
6 Hb_000034_150 0.1950554734 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
7 Hb_008725_240 0.2078502254 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000663_070 0.2107811122 - - cyclin A, putative [Ricinus communis]
9 Hb_001989_030 0.2149251032 - - PREDICTED: copper transport protein ATX1 [Jatropha curcas]
10 Hb_000028_240 0.2172314914 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000956_050 0.2182282798 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
12 Hb_002205_180 0.218677993 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
13 Hb_003740_030 0.2202024101 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
14 Hb_011609_130 0.2250074779 - - -
15 Hb_000424_050 0.2254902567 - - erecta, putative [Ricinus communis]
16 Hb_000256_030 0.2257653414 - - transferase, putative [Ricinus communis]
17 Hb_006520_030 0.2265577655 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
18 Hb_003228_050 0.227926395 - - chromomethylase [Hevea brasiliensis]
19 Hb_000907_140 0.2281316102 - - PREDICTED: annexin D5-like [Jatropha curcas]
20 Hb_014497_070 0.2286899714 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_020 Hb_003540_020 Hb_000152_780 Hb_000152_780 Hb_003540_020--Hb_000152_780 Hb_000111_430 Hb_000111_430 Hb_003540_020--Hb_000111_430 Hb_024494_010 Hb_024494_010 Hb_003540_020--Hb_024494_010 Hb_006570_040 Hb_006570_040 Hb_003540_020--Hb_006570_040 Hb_000034_150 Hb_000034_150 Hb_003540_020--Hb_000034_150 Hb_008725_240 Hb_008725_240 Hb_003540_020--Hb_008725_240 Hb_010267_020 Hb_010267_020 Hb_000152_780--Hb_010267_020 Hb_000142_030 Hb_000142_030 Hb_000152_780--Hb_000142_030 Hb_000907_140 Hb_000907_140 Hb_000152_780--Hb_000907_140 Hb_003992_130 Hb_003992_130 Hb_000152_780--Hb_003992_130 Hb_002918_220 Hb_002918_220 Hb_000152_780--Hb_002918_220 Hb_006520_030 Hb_006520_030 Hb_000111_430--Hb_006520_030 Hb_000111_430--Hb_008725_240 Hb_000111_430--Hb_000034_150 Hb_003228_050 Hb_003228_050 Hb_000111_430--Hb_003228_050 Hb_002205_180 Hb_002205_180 Hb_000111_430--Hb_002205_180 Hb_007520_050 Hb_007520_050 Hb_024494_010--Hb_007520_050 Hb_001357_160 Hb_001357_160 Hb_024494_010--Hb_001357_160 Hb_000107_580 Hb_000107_580 Hb_024494_010--Hb_000107_580 Hb_001386_060 Hb_001386_060 Hb_024494_010--Hb_001386_060 Hb_001856_190 Hb_001856_190 Hb_024494_010--Hb_001856_190 Hb_001439_050 Hb_001439_050 Hb_024494_010--Hb_001439_050 Hb_005946_020 Hb_005946_020 Hb_006570_040--Hb_005946_020 Hb_000028_240 Hb_000028_240 Hb_006570_040--Hb_000028_240 Hb_000139_280 Hb_000139_280 Hb_006570_040--Hb_000139_280 Hb_000190_220 Hb_000190_220 Hb_006570_040--Hb_000190_220 Hb_000260_040 Hb_000260_040 Hb_006570_040--Hb_000260_040 Hb_000956_050 Hb_000956_050 Hb_006570_040--Hb_000956_050 Hb_000034_150--Hb_002205_180 Hb_014497_070 Hb_014497_070 Hb_000034_150--Hb_014497_070 Hb_004102_090 Hb_004102_090 Hb_000034_150--Hb_004102_090 Hb_124677_050 Hb_124677_050 Hb_000034_150--Hb_124677_050 Hb_000663_070 Hb_000663_070 Hb_000034_150--Hb_000663_070 Hb_000638_240 Hb_000638_240 Hb_000034_150--Hb_000638_240 Hb_008725_240--Hb_006520_030 Hb_010705_040 Hb_010705_040 Hb_008725_240--Hb_010705_040 Hb_005288_090 Hb_005288_090 Hb_008725_240--Hb_005288_090 Hb_003777_260 Hb_003777_260 Hb_008725_240--Hb_003777_260 Hb_000364_140 Hb_000364_140 Hb_008725_240--Hb_000364_140 Hb_002374_090 Hb_002374_090 Hb_008725_240--Hb_002374_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.144669 2.25492 0.875086 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.478153 0 0.138616 0.319626

CAGE analysis