Hb_000302_350

Information

Type -
Description -
Location Contig302: 228724-251580
Sequence    

Annotation

kegg
ID rcu:RCOM_1582420
description polygalacturonase, putative (EC:3.2.1.15)
nr
ID XP_002513653.1
description polygalacturonase, putative [Ricinus communis]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID B9RIT4
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1582420 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_350 0.0 - - polygalacturonase, putative [Ricinus communis]
2 Hb_000108_060 0.1837809369 - - hypothetical protein POPTR_0010s07820g [Populus trichocarpa]
3 Hb_146902_010 0.2483191223 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003197_070 0.2537963014 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
5 Hb_001541_220 0.2557861065 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
6 Hb_000116_200 0.2596183788 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
7 Hb_000111_440 0.2614483362 - - -
8 Hb_051997_010 0.2742808243 - - -
9 Hb_154600_010 0.2743329526 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
10 Hb_007432_010 0.2788788515 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
11 Hb_067034_020 0.2847443042 - - PREDICTED: iridoid synthase [Jatropha curcas]
12 Hb_000236_170 0.2943201446 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
13 Hb_159327_010 0.2971734043 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
14 Hb_011476_020 0.2974865177 - - PREDICTED: glutamate dehydrogenase 2-like [Jatropha curcas]
15 Hb_003376_370 0.2996387451 - - protein binding protein, putative [Ricinus communis]
16 Hb_008971_030 0.3029559087 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004785_050 0.3034170564 - - PREDICTED: serine decarboxylase [Jatropha curcas]
18 Hb_000896_070 0.3050997958 - - ammonium transporter, putative [Ricinus communis]
19 Hb_007617_040 0.3103820522 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
20 Hb_001143_150 0.3116153239 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]

Gene co-expression network

sample Hb_000302_350 Hb_000302_350 Hb_000108_060 Hb_000108_060 Hb_000302_350--Hb_000108_060 Hb_146902_010 Hb_146902_010 Hb_000302_350--Hb_146902_010 Hb_003197_070 Hb_003197_070 Hb_000302_350--Hb_003197_070 Hb_001541_220 Hb_001541_220 Hb_000302_350--Hb_001541_220 Hb_000116_200 Hb_000116_200 Hb_000302_350--Hb_000116_200 Hb_000111_440 Hb_000111_440 Hb_000302_350--Hb_000111_440 Hb_000108_060--Hb_003197_070 Hb_007432_010 Hb_007432_010 Hb_000108_060--Hb_007432_010 Hb_000108_060--Hb_000111_440 Hb_183671_010 Hb_183671_010 Hb_000108_060--Hb_183671_010 Hb_002397_060 Hb_002397_060 Hb_000108_060--Hb_002397_060 Hb_146902_010--Hb_001541_220 Hb_119808_020 Hb_119808_020 Hb_146902_010--Hb_119808_020 Hb_008971_030 Hb_008971_030 Hb_146902_010--Hb_008971_030 Hb_011316_140 Hb_011316_140 Hb_146902_010--Hb_011316_140 Hb_067034_020 Hb_067034_020 Hb_146902_010--Hb_067034_020 Hb_000284_280 Hb_000284_280 Hb_146902_010--Hb_000284_280 Hb_003197_070--Hb_007432_010 Hb_003197_070--Hb_000111_440 Hb_000740_020 Hb_000740_020 Hb_003197_070--Hb_000740_020 Hb_001842_030 Hb_001842_030 Hb_003197_070--Hb_001842_030 Hb_001541_220--Hb_119808_020 Hb_001541_220--Hb_067034_020 Hb_001541_220--Hb_011316_140 Hb_013654_030 Hb_013654_030 Hb_001541_220--Hb_013654_030 Hb_001541_220--Hb_008971_030 Hb_001195_210 Hb_001195_210 Hb_000116_200--Hb_001195_210 Hb_003376_370 Hb_003376_370 Hb_000116_200--Hb_003376_370 Hb_154600_010 Hb_154600_010 Hb_000116_200--Hb_154600_010 Hb_001754_160 Hb_001754_160 Hb_000116_200--Hb_001754_160 Hb_000031_330 Hb_000031_330 Hb_000116_200--Hb_000031_330 Hb_003643_030 Hb_003643_030 Hb_000116_200--Hb_003643_030 Hb_000111_440--Hb_008971_030 Hb_007382_090 Hb_007382_090 Hb_000111_440--Hb_007382_090 Hb_000111_440--Hb_007432_010 Hb_003740_030 Hb_003740_030 Hb_000111_440--Hb_003740_030 Hb_005332_130 Hb_005332_130 Hb_000111_440--Hb_005332_130 Hb_051997_010 Hb_051997_010 Hb_000111_440--Hb_051997_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00674036 0 0.0184537 0.0365622 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0145871 0 0.00192246 0

CAGE analysis