Hb_000227_030

Information

Type -
Description -
Location Contig227: 27969-28880
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_030 0.0 - - -
2 Hb_039635_010 0.2377575906 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_151978_010 0.2554793843 - - -
4 Hb_179763_020 0.2607153974 - - -
5 Hb_079993_010 0.3076217763 - - PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]
6 Hb_163413_010 0.3088872336 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
7 Hb_002641_110 0.3245145136 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
8 Hb_004223_200 0.3245474267 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
9 Hb_123915_050 0.3383873974 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
10 Hb_000529_120 0.3504465689 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
11 Hb_007426_240 0.3521491727 - - -
12 Hb_000173_300 0.3530118622 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
13 Hb_026113_020 0.3544799091 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_006684_020 0.3549626981 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000976_220 0.3568185938 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
16 Hb_127120_010 0.3568283595 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_007407_030 0.3568645037 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
18 Hb_000092_210 0.3589279729 - - -
19 Hb_021888_110 0.3623263635 - - -
20 Hb_007574_060 0.3627838149 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]

Gene co-expression network

sample Hb_000227_030 Hb_000227_030 Hb_039635_010 Hb_039635_010 Hb_000227_030--Hb_039635_010 Hb_151978_010 Hb_151978_010 Hb_000227_030--Hb_151978_010 Hb_179763_020 Hb_179763_020 Hb_000227_030--Hb_179763_020 Hb_079993_010 Hb_079993_010 Hb_000227_030--Hb_079993_010 Hb_163413_010 Hb_163413_010 Hb_000227_030--Hb_163413_010 Hb_002641_110 Hb_002641_110 Hb_000227_030--Hb_002641_110 Hb_039635_010--Hb_151978_010 Hb_039635_010--Hb_179763_020 Hb_036285_010 Hb_036285_010 Hb_039635_010--Hb_036285_010 Hb_002750_020 Hb_002750_020 Hb_039635_010--Hb_002750_020 Hb_039635_010--Hb_002641_110 Hb_151978_010--Hb_002750_020 Hb_151978_010--Hb_002641_110 Hb_010803_010 Hb_010803_010 Hb_151978_010--Hb_010803_010 Hb_168418_010 Hb_168418_010 Hb_151978_010--Hb_168418_010 Hb_123915_050 Hb_123915_050 Hb_179763_020--Hb_123915_050 Hb_002188_100 Hb_002188_100 Hb_179763_020--Hb_002188_100 Hb_000563_220 Hb_000563_220 Hb_179763_020--Hb_000563_220 Hb_000463_050 Hb_000463_050 Hb_179763_020--Hb_000463_050 Hb_002291_040 Hb_002291_040 Hb_079993_010--Hb_002291_040 Hb_000926_350 Hb_000926_350 Hb_079993_010--Hb_000926_350 Hb_145827_010 Hb_145827_010 Hb_079993_010--Hb_145827_010 Hb_153461_010 Hb_153461_010 Hb_079993_010--Hb_153461_010 Hb_124141_010 Hb_124141_010 Hb_079993_010--Hb_124141_010 Hb_007574_060 Hb_007574_060 Hb_163413_010--Hb_007574_060 Hb_163413_010--Hb_036285_010 Hb_021888_110 Hb_021888_110 Hb_163413_010--Hb_021888_110 Hb_000832_240 Hb_000832_240 Hb_163413_010--Hb_000832_240 Hb_000367_170 Hb_000367_170 Hb_163413_010--Hb_000367_170 Hb_001981_080 Hb_001981_080 Hb_163413_010--Hb_001981_080 Hb_002641_110--Hb_010803_010 Hb_028271_010 Hb_028271_010 Hb_002641_110--Hb_028271_010 Hb_014556_020 Hb_014556_020 Hb_002641_110--Hb_014556_020 Hb_001377_390 Hb_001377_390 Hb_002641_110--Hb_001377_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.339918 0 0 0.118256 0.104552 0.803304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.14158 0 0 0

CAGE analysis