Hb_153461_010

Information

Type -
Description -
Location Contig153461: 181-519
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012080767.1
description PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153461_010 0.0 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
2 Hb_054936_010 0.2552405436 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
3 Hb_000903_030 0.2653749927 - - -
4 Hb_124141_010 0.2967503174 - - plant origin recognition complex subunit, putative [Ricinus communis]
5 Hb_000684_480 0.3103847658 transcription factor TF Family: Orphans -
6 Hb_079993_010 0.3127064361 - - PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]
7 Hb_000086_190 0.3287017493 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
8 Hb_001069_020 0.3312659037 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
9 Hb_032531_060 0.3318207378 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
10 Hb_002027_330 0.3320300791 - - -
11 Hb_000427_070 0.3331981918 - - -
12 Hb_019520_010 0.3390772211 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_006065_040 0.3406344541 - - -
14 Hb_007188_050 0.3419639746 - - -
15 Hb_005731_140 0.3467988798 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
16 Hb_000204_020 0.3550671433 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
17 Hb_000120_190 0.3558064201 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
18 Hb_074979_010 0.3567201839 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]
19 Hb_007447_020 0.3567289385 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
20 Hb_002482_060 0.357364647 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_153461_010 Hb_153461_010 Hb_054936_010 Hb_054936_010 Hb_153461_010--Hb_054936_010 Hb_000903_030 Hb_000903_030 Hb_153461_010--Hb_000903_030 Hb_124141_010 Hb_124141_010 Hb_153461_010--Hb_124141_010 Hb_000684_480 Hb_000684_480 Hb_153461_010--Hb_000684_480 Hb_079993_010 Hb_079993_010 Hb_153461_010--Hb_079993_010 Hb_000086_190 Hb_000086_190 Hb_153461_010--Hb_000086_190 Hb_002307_070 Hb_002307_070 Hb_054936_010--Hb_002307_070 Hb_184212_010 Hb_184212_010 Hb_054936_010--Hb_184212_010 Hb_013925_010 Hb_013925_010 Hb_054936_010--Hb_013925_010 Hb_054936_010--Hb_079993_010 Hb_000922_130 Hb_000922_130 Hb_054936_010--Hb_000922_130 Hb_007188_050 Hb_007188_050 Hb_000903_030--Hb_007188_050 Hb_032531_050 Hb_032531_050 Hb_000903_030--Hb_032531_050 Hb_002988_020 Hb_002988_020 Hb_000903_030--Hb_002988_020 Hb_079978_010 Hb_079978_010 Hb_000903_030--Hb_079978_010 Hb_000903_030--Hb_000684_480 Hb_005731_140 Hb_005731_140 Hb_124141_010--Hb_005731_140 Hb_003029_100 Hb_003029_100 Hb_124141_010--Hb_003029_100 Hb_166480_010 Hb_166480_010 Hb_124141_010--Hb_166480_010 Hb_032531_060 Hb_032531_060 Hb_124141_010--Hb_032531_060 Hb_034579_010 Hb_034579_010 Hb_124141_010--Hb_034579_010 Hb_002482_060 Hb_002482_060 Hb_124141_010--Hb_002482_060 Hb_001907_090 Hb_001907_090 Hb_000684_480--Hb_001907_090 Hb_000316_090 Hb_000316_090 Hb_000684_480--Hb_000316_090 Hb_000684_480--Hb_003029_100 Hb_004958_040 Hb_004958_040 Hb_000684_480--Hb_004958_040 Hb_000684_480--Hb_124141_010 Hb_075745_010 Hb_075745_010 Hb_000684_480--Hb_075745_010 Hb_002291_040 Hb_002291_040 Hb_079993_010--Hb_002291_040 Hb_000926_350 Hb_000926_350 Hb_079993_010--Hb_000926_350 Hb_145827_010 Hb_145827_010 Hb_079993_010--Hb_145827_010 Hb_000227_030 Hb_000227_030 Hb_079993_010--Hb_000227_030 Hb_079993_010--Hb_124141_010 Hb_000668_020 Hb_000668_020 Hb_000086_190--Hb_000668_020 Hb_010368_030 Hb_010368_030 Hb_000086_190--Hb_010368_030 Hb_012675_080 Hb_012675_080 Hb_000086_190--Hb_012675_080 Hb_000289_080 Hb_000289_080 Hb_000086_190--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_000086_190--Hb_006995_010 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15696 0 0 0.259018 0 1.07296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.220376 0.332035 0 0

CAGE analysis