Hb_184212_010

Information

Type -
Description -
Location Contig184212: 6865-8680
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15520g
description POPTRDRAFT_711860; hypothetical protein
nr
ID XP_011008217.1
description PREDICTED: uncharacterized protein LOC105113658 [Populus euphratica]
swissprot
ID P05100
description DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1
trembl
ID B9GYH5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15520g PE=4 SV=2
Gene Ontology
ID GO:0016798
description dna glycosylase superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18053: 6213-8754
cDNA
(Sanger)
(ID:Location)		 019_G18.ab1: 8110-8748 , 050_N18.ab1: 8120-8754

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184212_010 0.0 - - PREDICTED: uncharacterized protein LOC105113658 [Populus euphratica]
2 Hb_000415_060 0.216003266 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
3 Hb_005797_050 0.2385840871 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
4 Hb_002307_050 0.2490038454 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
5 Hb_000365_260 0.2491308732 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012390_010 0.2513590169 - - pectate lyase 1 [Hevea brasiliensis]
7 Hb_085226_010 0.2580035094 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
8 Hb_057183_040 0.2637647437 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
9 Hb_000347_500 0.2668033762 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
10 Hb_001946_280 0.2690200529 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004994_310 0.2697145726 - - Kiwellin, putative [Ricinus communis]
12 Hb_087762_010 0.2748220386 - - thioredoxin-like family protein [Hevea brasiliensis]
13 Hb_003106_010 0.2753790229 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
14 Hb_128496_010 0.2757886991 - - unnamed protein product [Vitis vinifera]
15 Hb_002157_190 0.2758706907 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
16 Hb_007741_170 0.2795806964 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
17 Hb_100414_010 0.2796501812 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
18 Hb_000193_150 0.2816996597 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
19 Hb_000120_240 0.2819034462 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
20 Hb_003060_070 0.2829556649 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_184212_010 Hb_184212_010 Hb_000415_060 Hb_000415_060 Hb_184212_010--Hb_000415_060 Hb_005797_050 Hb_005797_050 Hb_184212_010--Hb_005797_050 Hb_002307_050 Hb_002307_050 Hb_184212_010--Hb_002307_050 Hb_000365_260 Hb_000365_260 Hb_184212_010--Hb_000365_260 Hb_012390_010 Hb_012390_010 Hb_184212_010--Hb_012390_010 Hb_085226_010 Hb_085226_010 Hb_184212_010--Hb_085226_010 Hb_000028_160 Hb_000028_160 Hb_000415_060--Hb_000028_160 Hb_152079_010 Hb_152079_010 Hb_000415_060--Hb_152079_010 Hb_000347_500 Hb_000347_500 Hb_000415_060--Hb_000347_500 Hb_011030_010 Hb_011030_010 Hb_000415_060--Hb_011030_010 Hb_046931_010 Hb_046931_010 Hb_000415_060--Hb_046931_010 Hb_021420_010 Hb_021420_010 Hb_000415_060--Hb_021420_010 Hb_032264_130 Hb_032264_130 Hb_005797_050--Hb_032264_130 Hb_000186_100 Hb_000186_100 Hb_005797_050--Hb_000186_100 Hb_123104_010 Hb_123104_010 Hb_005797_050--Hb_123104_010 Hb_001138_010 Hb_001138_010 Hb_005797_050--Hb_001138_010 Hb_017111_010 Hb_017111_010 Hb_005797_050--Hb_017111_010 Hb_007741_170 Hb_007741_170 Hb_002307_050--Hb_007741_170 Hb_002078_430 Hb_002078_430 Hb_002307_050--Hb_002078_430 Hb_005298_060 Hb_005298_060 Hb_002307_050--Hb_005298_060 Hb_004137_030 Hb_004137_030 Hb_002307_050--Hb_004137_030 Hb_011609_030 Hb_011609_030 Hb_002307_050--Hb_011609_030 Hb_002619_010 Hb_002619_010 Hb_002307_050--Hb_002619_010 Hb_162286_020 Hb_162286_020 Hb_000365_260--Hb_162286_020 Hb_000179_200 Hb_000179_200 Hb_000365_260--Hb_000179_200 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_001916_120 Hb_001916_120 Hb_000365_260--Hb_001916_120 Hb_002027_220 Hb_002027_220 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_000120_240 Hb_000120_240 Hb_012390_010--Hb_000120_240 Hb_000258_080 Hb_000258_080 Hb_012390_010--Hb_000258_080 Hb_012390_010--Hb_002027_220 Hb_004449_220 Hb_004449_220 Hb_012390_010--Hb_004449_220 Hb_057183_040 Hb_057183_040 Hb_012390_010--Hb_057183_040 Hb_002716_150 Hb_002716_150 Hb_012390_010--Hb_002716_150 Hb_000138_190 Hb_000138_190 Hb_085226_010--Hb_000138_190 Hb_002471_200 Hb_002471_200 Hb_085226_010--Hb_002471_200 Hb_007765_060 Hb_007765_060 Hb_085226_010--Hb_007765_060 Hb_085226_010--Hb_057183_040 Hb_100414_010 Hb_100414_010 Hb_085226_010--Hb_100414_010 Hb_085226_010--Hb_007741_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4965 0.372278 2.53406 1.31731 0.887769 9.74316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.697577 3.44487 3.69332 0.23187 0.885132

CAGE analysis