Hb_005797_050

Information

Type -
Description -
Location Contig5797: 57970-60230
Sequence    

Annotation

kegg
ID rcu:RCOM_0838840
description RING-H2 finger protein ATL2N, putative
nr
ID XP_012087052.1
description PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
swissprot
ID Q9SRM0
description RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1
trembl
ID A0A067LC17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005797_050 0.0 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
2 Hb_032264_130 0.2202176069 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
3 Hb_000186_100 0.2381086979 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
4 Hb_184212_010 0.2385840871 - - PREDICTED: uncharacterized protein LOC105113658 [Populus euphratica]
5 Hb_123104_010 0.2407375982 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_001138_010 0.2427051806 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_017111_010 0.2449359959 - - PREDICTED: inositol transporter 4 [Jatropha curcas]
8 Hb_000028_630 0.247042697 - - PIN-like protein, partial [Selaginella apoda]
9 Hb_010290_020 0.2541835013 - - RAB6-interacting protein, putative [Ricinus communis]
10 Hb_095471_010 0.2546987664 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
11 Hb_002388_060 0.2548571412 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000605_010 0.2556117273 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
13 Hb_000101_180 0.2562037327 - - -
14 Hb_002007_290 0.2602974788 - - -
15 Hb_004307_040 0.2655824038 - - -
16 Hb_007545_210 0.2659892574 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
17 Hb_040506_010 0.2696686099 - - protein binding protein, putative [Ricinus communis]
18 Hb_000815_100 0.2722645437 - - -
19 Hb_000365_260 0.2724592481 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001178_020 0.2744417401 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005797_050 Hb_005797_050 Hb_032264_130 Hb_032264_130 Hb_005797_050--Hb_032264_130 Hb_000186_100 Hb_000186_100 Hb_005797_050--Hb_000186_100 Hb_184212_010 Hb_184212_010 Hb_005797_050--Hb_184212_010 Hb_123104_010 Hb_123104_010 Hb_005797_050--Hb_123104_010 Hb_001138_010 Hb_001138_010 Hb_005797_050--Hb_001138_010 Hb_017111_010 Hb_017111_010 Hb_005797_050--Hb_017111_010 Hb_002388_060 Hb_002388_060 Hb_032264_130--Hb_002388_060 Hb_011616_030 Hb_011616_030 Hb_032264_130--Hb_011616_030 Hb_053262_010 Hb_053262_010 Hb_032264_130--Hb_053262_010 Hb_019936_010 Hb_019936_010 Hb_032264_130--Hb_019936_010 Hb_007545_210 Hb_007545_210 Hb_032264_130--Hb_007545_210 Hb_170116_010 Hb_170116_010 Hb_032264_130--Hb_170116_010 Hb_000186_100--Hb_017111_010 Hb_000186_100--Hb_002388_060 Hb_000186_100--Hb_007545_210 Hb_040506_010 Hb_040506_010 Hb_000186_100--Hb_040506_010 Hb_003687_200 Hb_003687_200 Hb_000186_100--Hb_003687_200 Hb_000186_100--Hb_032264_130 Hb_000415_060 Hb_000415_060 Hb_184212_010--Hb_000415_060 Hb_002307_050 Hb_002307_050 Hb_184212_010--Hb_002307_050 Hb_000365_260 Hb_000365_260 Hb_184212_010--Hb_000365_260 Hb_012390_010 Hb_012390_010 Hb_184212_010--Hb_012390_010 Hb_085226_010 Hb_085226_010 Hb_184212_010--Hb_085226_010 Hb_123104_010--Hb_000186_100 Hb_000313_320 Hb_000313_320 Hb_123104_010--Hb_000313_320 Hb_123104_010--Hb_002307_050 Hb_123104_010--Hb_017111_010 Hb_000101_180 Hb_000101_180 Hb_123104_010--Hb_000101_180 Hb_002007_290 Hb_002007_290 Hb_123104_010--Hb_002007_290 Hb_000252_090 Hb_000252_090 Hb_001138_010--Hb_000252_090 Hb_001916_120 Hb_001916_120 Hb_001138_010--Hb_001916_120 Hb_000605_010 Hb_000605_010 Hb_001138_010--Hb_000605_010 Hb_001677_050 Hb_001677_050 Hb_001138_010--Hb_001677_050 Hb_000156_030 Hb_000156_030 Hb_001138_010--Hb_000156_030 Hb_003540_140 Hb_003540_140 Hb_001138_010--Hb_003540_140 Hb_000523_020 Hb_000523_020 Hb_017111_010--Hb_000523_020 Hb_017111_010--Hb_002388_060 Hb_017111_010--Hb_003687_200 Hb_017111_010--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_017111_010--Hb_126669_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9022 0.242264 0.420008 0.214305 3.03655 7.91463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227304 1.69682 1.38848 0.0368109 0.682105

CAGE analysis