Hb_054936_010

Information

Type -
Description -
Location Contig54936: 2-781
Sequence    

Annotation

kegg
ID tcc:TCM_036595
description hypothetical protein
nr
ID XP_012477608.1
description PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FJB0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_036595 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054936_010 0.0 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
2 Hb_153461_010 0.2552405436 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
3 Hb_002307_070 0.2907588474 - - hypothetical protein JCGZ_14841 [Jatropha curcas]
4 Hb_184212_010 0.3193596623 - - PREDICTED: uncharacterized protein LOC105113658 [Populus euphratica]
5 Hb_013925_010 0.3215366018 - - RecName: Full=Pro-hevein; AltName: Full=Major hevein; Contains: RecName: Full=Hevein; AltName: Allergen=Hev b 6; Contains: RecName: Full=Win-like protein; Flags: Precursor [Hevea brasiliensis]
6 Hb_079993_010 0.3330976353 - - PREDICTED: uncharacterized protein LOC103336399 [Prunus mume]
7 Hb_000922_130 0.3357115017 - - hypothetical protein POPTR_0008s04925g [Populus trichocarpa]
8 Hb_053971_010 0.3382606177 - - -
9 Hb_116681_010 0.3508349585 - - hypothetical protein PRUPE_ppa025968mg, partial [Prunus persica]
10 Hb_004032_080 0.3552896813 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
11 Hb_024937_020 0.3566176336 - - -
12 Hb_132303_010 0.3588648688 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_002027_330 0.3640614002 - - -
14 Hb_002490_050 0.365035567 - - Os02g0182500, partial [Oryza sativa Japonica Group]
15 Hb_046440_010 0.3663759207 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
16 Hb_004968_060 0.3702243973 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000705_220 0.3709792392 - - unnamed protein product [Vitis vinifera]
18 Hb_009680_050 0.3715579799 - - -
19 Hb_045941_010 0.3745022395 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
20 Hb_000300_010 0.3775921006 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_054936_010 Hb_054936_010 Hb_153461_010 Hb_153461_010 Hb_054936_010--Hb_153461_010 Hb_002307_070 Hb_002307_070 Hb_054936_010--Hb_002307_070 Hb_184212_010 Hb_184212_010 Hb_054936_010--Hb_184212_010 Hb_013925_010 Hb_013925_010 Hb_054936_010--Hb_013925_010 Hb_079993_010 Hb_079993_010 Hb_054936_010--Hb_079993_010 Hb_000922_130 Hb_000922_130 Hb_054936_010--Hb_000922_130 Hb_000903_030 Hb_000903_030 Hb_153461_010--Hb_000903_030 Hb_124141_010 Hb_124141_010 Hb_153461_010--Hb_124141_010 Hb_000684_480 Hb_000684_480 Hb_153461_010--Hb_000684_480 Hb_153461_010--Hb_079993_010 Hb_000086_190 Hb_000086_190 Hb_153461_010--Hb_000086_190 Hb_002490_050 Hb_002490_050 Hb_002307_070--Hb_002490_050 Hb_007904_190 Hb_007904_190 Hb_002307_070--Hb_007904_190 Hb_005671_030 Hb_005671_030 Hb_002307_070--Hb_005671_030 Hb_176022_010 Hb_176022_010 Hb_002307_070--Hb_176022_010 Hb_066620_010 Hb_066620_010 Hb_002307_070--Hb_066620_010 Hb_000415_060 Hb_000415_060 Hb_184212_010--Hb_000415_060 Hb_005797_050 Hb_005797_050 Hb_184212_010--Hb_005797_050 Hb_002307_050 Hb_002307_050 Hb_184212_010--Hb_002307_050 Hb_000365_260 Hb_000365_260 Hb_184212_010--Hb_000365_260 Hb_012390_010 Hb_012390_010 Hb_184212_010--Hb_012390_010 Hb_085226_010 Hb_085226_010 Hb_184212_010--Hb_085226_010 Hb_116681_010 Hb_116681_010 Hb_013925_010--Hb_116681_010 Hb_001195_390 Hb_001195_390 Hb_013925_010--Hb_001195_390 Hb_001425_120 Hb_001425_120 Hb_013925_010--Hb_001425_120 Hb_130788_010 Hb_130788_010 Hb_013925_010--Hb_130788_010 Hb_002243_040 Hb_002243_040 Hb_013925_010--Hb_002243_040 Hb_007753_020 Hb_007753_020 Hb_013925_010--Hb_007753_020 Hb_002291_040 Hb_002291_040 Hb_079993_010--Hb_002291_040 Hb_000926_350 Hb_000926_350 Hb_079993_010--Hb_000926_350 Hb_145827_010 Hb_145827_010 Hb_079993_010--Hb_145827_010 Hb_000227_030 Hb_000227_030 Hb_079993_010--Hb_000227_030 Hb_079993_010--Hb_124141_010 Hb_005723_040 Hb_005723_040 Hb_000922_130--Hb_005723_040 Hb_063912_010 Hb_063912_010 Hb_000922_130--Hb_063912_010 Hb_000922_130--Hb_001195_390 Hb_046440_010 Hb_046440_010 Hb_000922_130--Hb_046440_010 Hb_000939_010 Hb_000939_010 Hb_000922_130--Hb_000939_010 Hb_000922_130--Hb_002243_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190605 0 0 0.0516173 0 0.239712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.109766 0.0990425 0 0

CAGE analysis