Hb_002641_110

Information

Type -
Description -
Location Contig2641: 161814-163132
Sequence    

Annotation

kegg
ID mdm:103448574
description uncharacterized LOC103448574
nr
ID XP_008386064.1
description PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A0D9XBY8
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_110 0.0 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
2 Hb_010803_010 0.1962910779 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_028271_010 0.2422510535 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
4 Hb_151978_010 0.2680549794 - - -
5 Hb_014556_020 0.2865161898 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_001377_390 0.2938970369 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
7 Hb_039635_010 0.3127918391 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_000227_030 0.3245145136 - - -
9 Hb_007407_030 0.3316191138 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
10 Hb_127120_010 0.3316600991 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_000976_220 0.3316712075 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
12 Hb_017170_010 0.3325463408 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
13 Hb_006684_020 0.3340938288 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_026113_020 0.3348481169 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000173_300 0.3376065592 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
16 Hb_000252_140 0.3382469162 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002750_020 0.3408937159 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
18 Hb_003554_020 0.341030215 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
19 Hb_001045_100 0.3481823077 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
20 Hb_001102_100 0.3555337092 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002641_110 Hb_002641_110 Hb_010803_010 Hb_010803_010 Hb_002641_110--Hb_010803_010 Hb_028271_010 Hb_028271_010 Hb_002641_110--Hb_028271_010 Hb_151978_010 Hb_151978_010 Hb_002641_110--Hb_151978_010 Hb_014556_020 Hb_014556_020 Hb_002641_110--Hb_014556_020 Hb_001377_390 Hb_001377_390 Hb_002641_110--Hb_001377_390 Hb_039635_010 Hb_039635_010 Hb_002641_110--Hb_039635_010 Hb_010803_010--Hb_151978_010 Hb_010803_010--Hb_028271_010 Hb_010803_010--Hb_039635_010 Hb_017214_050 Hb_017214_050 Hb_010803_010--Hb_017214_050 Hb_002027_370 Hb_002027_370 Hb_010803_010--Hb_002027_370 Hb_001221_460 Hb_001221_460 Hb_028271_010--Hb_001221_460 Hb_017170_010 Hb_017170_010 Hb_028271_010--Hb_017170_010 Hb_001102_100 Hb_001102_100 Hb_028271_010--Hb_001102_100 Hb_012754_030 Hb_012754_030 Hb_028271_010--Hb_012754_030 Hb_004414_040 Hb_004414_040 Hb_028271_010--Hb_004414_040 Hb_151978_010--Hb_039635_010 Hb_000227_030 Hb_000227_030 Hb_151978_010--Hb_000227_030 Hb_002750_020 Hb_002750_020 Hb_151978_010--Hb_002750_020 Hb_168418_010 Hb_168418_010 Hb_151978_010--Hb_168418_010 Hb_014556_020--Hb_001377_390 Hb_000359_240 Hb_000359_240 Hb_014556_020--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_014556_020--Hb_062135_010 Hb_000252_140 Hb_000252_140 Hb_014556_020--Hb_000252_140 Hb_003554_020 Hb_003554_020 Hb_014556_020--Hb_003554_020 Hb_010320_030 Hb_010320_030 Hb_014556_020--Hb_010320_030 Hb_001377_390--Hb_000252_140 Hb_001377_390--Hb_000359_240 Hb_001377_390--Hb_062135_010 Hb_001377_390--Hb_003554_020 Hb_001377_390--Hb_010320_030 Hb_039635_010--Hb_000227_030 Hb_179763_020 Hb_179763_020 Hb_039635_010--Hb_179763_020 Hb_036285_010 Hb_036285_010 Hb_039635_010--Hb_036285_010 Hb_039635_010--Hb_002750_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0431779 0 0 0 0 0.0769358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.236318 0 0.0322949 0

CAGE analysis