Hb_028271_010

Information

Type -
Description -
Location Contig28271: 9738-11033
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12280g
description hypothetical protein
nr
ID XP_011002663.1
description PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
swissprot
ID B6VJS4
description Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2
trembl
ID U5FF21
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12280g PE=4 SV=1
Gene Ontology
ID GO:0046983
description trans-resveratrol di-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028271_010 0.0 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
2 Hb_001221_460 0.182883032 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_017170_010 0.1833102773 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
4 Hb_002641_110 0.2422510535 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
5 Hb_001102_100 0.2613153669 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
6 Hb_012754_030 0.2637988287 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
7 Hb_004414_040 0.2763264066 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
8 Hb_005772_010 0.2922667312 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
9 Hb_086692_020 0.2950611677 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
10 Hb_003847_020 0.3037884698 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_000340_440 0.3048857826 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
12 Hb_010803_010 0.3096448895 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_002908_070 0.3106927628 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
14 Hb_012305_020 0.3134207721 - - beta-1,3-glucanase [Hevea brasiliensis]
15 Hb_041405_010 0.315512664 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Glycine max]
16 Hb_002784_140 0.316974479 - - glutamate receptor 2 plant, putative [Ricinus communis]
17 Hb_003398_140 0.317589602 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_001277_080 0.3202340468 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
19 Hb_000563_310 0.3240466775 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
20 Hb_002027_370 0.3354114347 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028271_010 Hb_028271_010 Hb_001221_460 Hb_001221_460 Hb_028271_010--Hb_001221_460 Hb_017170_010 Hb_017170_010 Hb_028271_010--Hb_017170_010 Hb_002641_110 Hb_002641_110 Hb_028271_010--Hb_002641_110 Hb_001102_100 Hb_001102_100 Hb_028271_010--Hb_001102_100 Hb_012754_030 Hb_012754_030 Hb_028271_010--Hb_012754_030 Hb_004414_040 Hb_004414_040 Hb_028271_010--Hb_004414_040 Hb_001221_460--Hb_017170_010 Hb_033834_050 Hb_033834_050 Hb_001221_460--Hb_033834_050 Hb_003847_020 Hb_003847_020 Hb_001221_460--Hb_003847_020 Hb_001221_460--Hb_012754_030 Hb_026687_010 Hb_026687_010 Hb_001221_460--Hb_026687_010 Hb_041405_010 Hb_041405_010 Hb_017170_010--Hb_041405_010 Hb_096292_010 Hb_096292_010 Hb_017170_010--Hb_096292_010 Hb_187134_010 Hb_187134_010 Hb_017170_010--Hb_187134_010 Hb_007273_010 Hb_007273_010 Hb_017170_010--Hb_007273_010 Hb_010803_010 Hb_010803_010 Hb_002641_110--Hb_010803_010 Hb_151978_010 Hb_151978_010 Hb_002641_110--Hb_151978_010 Hb_014556_020 Hb_014556_020 Hb_002641_110--Hb_014556_020 Hb_001377_390 Hb_001377_390 Hb_002641_110--Hb_001377_390 Hb_039635_010 Hb_039635_010 Hb_002641_110--Hb_039635_010 Hb_000270_730 Hb_000270_730 Hb_001102_100--Hb_000270_730 Hb_001266_030 Hb_001266_030 Hb_001102_100--Hb_001266_030 Hb_001277_080 Hb_001277_080 Hb_001102_100--Hb_001277_080 Hb_005772_010 Hb_005772_010 Hb_001102_100--Hb_005772_010 Hb_183612_080 Hb_183612_080 Hb_001102_100--Hb_183612_080 Hb_002784_140 Hb_002784_140 Hb_001102_100--Hb_002784_140 Hb_000563_310 Hb_000563_310 Hb_012754_030--Hb_000563_310 Hb_003398_140 Hb_003398_140 Hb_012754_030--Hb_003398_140 Hb_000340_440 Hb_000340_440 Hb_012754_030--Hb_000340_440 Hb_009680_040 Hb_009680_040 Hb_012754_030--Hb_009680_040 Hb_012754_030--Hb_026687_010 Hb_004414_040--Hb_002784_140 Hb_004414_040--Hb_001277_080 Hb_004414_040--Hb_005772_010 Hb_004414_040--Hb_000340_440 Hb_006132_050 Hb_006132_050 Hb_004414_040--Hb_006132_050 Hb_004968_070 Hb_004968_070 Hb_004414_040--Hb_004968_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.98347 0.849118 0 0.696301 0.841378 5.32283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.39182 48.07 2.25622 8.97576 0

CAGE analysis