Hb_000230_340

Information

Type -
Description -
Location Contig230: 332288-332539
Sequence    

Annotation

kegg
ID rcu:RCOM_1327010
description Transcription elongation factor, putative
nr
ID XP_002520057.1
description Transcription elongation factor, putative [Ricinus communis]
swissprot
ID Q8LEF3
description Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1
trembl
ID B9S238
description Transcription elongation factor, putative OS=Ricinus communis GN=RCOM_1327010 PE=4 SV=1
Gene Ontology
ID GO:0003746
description transcription elongation factor 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_340 0.0 - - Transcription elongation factor, putative [Ricinus communis]
2 Hb_046609_010 0.2151963012 - - -
3 Hb_129358_010 0.2184820621 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
4 Hb_007639_010 0.2245244737 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
5 Hb_002988_020 0.2298206563 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
6 Hb_179112_010 0.2351477477 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
7 Hb_003362_010 0.2364475784 - - Actin-related protein 2/3 complex subunit 4 [Morus notabilis]
8 Hb_150498_010 0.2430452008 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_004829_020 0.2453693537 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_010172_060 0.2474494955 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
11 Hb_062858_010 0.2490278185 - - heat-shock protein, putative [Ricinus communis]
12 Hb_012340_040 0.2495851569 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
13 Hb_017134_020 0.252892666 - - -
14 Hb_010272_020 0.2569143365 - - hypothetical protein VITISV_030841 [Vitis vinifera]
15 Hb_073171_060 0.2631954411 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_000795_010 0.2660135644 - - -
17 Hb_003623_020 0.2670885269 - - -
18 Hb_000055_100 0.2704669596 - - polyprotein [Oryza australiensis]
19 Hb_000368_130 0.270914588 - - conserved hypothetical protein [Ricinus communis]
20 Hb_088224_010 0.2736801053 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]

Gene co-expression network

sample Hb_000230_340 Hb_000230_340 Hb_046609_010 Hb_046609_010 Hb_000230_340--Hb_046609_010 Hb_129358_010 Hb_129358_010 Hb_000230_340--Hb_129358_010 Hb_007639_010 Hb_007639_010 Hb_000230_340--Hb_007639_010 Hb_002988_020 Hb_002988_020 Hb_000230_340--Hb_002988_020 Hb_179112_010 Hb_179112_010 Hb_000230_340--Hb_179112_010 Hb_003362_010 Hb_003362_010 Hb_000230_340--Hb_003362_010 Hb_046609_010--Hb_129358_010 Hb_046609_010--Hb_007639_010 Hb_046609_010--Hb_003362_010 Hb_150498_010 Hb_150498_010 Hb_046609_010--Hb_150498_010 Hb_010272_020 Hb_010272_020 Hb_046609_010--Hb_010272_020 Hb_073171_060 Hb_073171_060 Hb_046609_010--Hb_073171_060 Hb_129358_010--Hb_007639_010 Hb_129358_010--Hb_003362_010 Hb_129358_010--Hb_150498_010 Hb_129358_010--Hb_010272_020 Hb_129358_010--Hb_073171_060 Hb_007639_010--Hb_003362_010 Hb_007639_010--Hb_150498_010 Hb_007639_010--Hb_010272_020 Hb_007639_010--Hb_073171_060 Hb_005735_010 Hb_005735_010 Hb_002988_020--Hb_005735_010 Hb_002988_020--Hb_179112_010 Hb_017134_020 Hb_017134_020 Hb_002988_020--Hb_017134_020 Hb_000903_030 Hb_000903_030 Hb_002988_020--Hb_000903_030 Hb_032531_050 Hb_032531_050 Hb_002988_020--Hb_032531_050 Hb_179112_010--Hb_005735_010 Hb_000094_060 Hb_000094_060 Hb_179112_010--Hb_000094_060 Hb_179112_010--Hb_017134_020 Hb_003952_140 Hb_003952_140 Hb_179112_010--Hb_003952_140 Hb_003362_010--Hb_150498_010 Hb_003362_010--Hb_010272_020 Hb_003362_010--Hb_073171_060 Hb_000055_100 Hb_000055_100 Hb_003362_010--Hb_000055_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.54154 21.2533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.85859 3.18047 0

CAGE analysis