Hb_010272_020

Information

Type -
Description -
Location Contig10272: 35259-36824
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN60490.1
description hypothetical protein VITISV_030841 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AQM5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_030841

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010272_020 0.0 - - hypothetical protein VITISV_030841 [Vitis vinifera]
2 Hb_073171_060 0.0116556968 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_000055_100 0.0244953959 - - polyprotein [Oryza australiensis]
4 Hb_000368_130 0.0252662009 - - conserved hypothetical protein [Ricinus communis]
5 Hb_150498_010 0.0283966374 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
6 Hb_088224_010 0.0299831399 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
7 Hb_000245_240 0.0312271156 - - -
8 Hb_000085_110 0.0321645628 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
9 Hb_003362_010 0.0438767491 - - Actin-related protein 2/3 complex subunit 4 [Morus notabilis]
10 Hb_004888_050 0.0690349317 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_007586_020 0.0706425063 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_007639_010 0.0786156151 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
13 Hb_157349_010 0.0947863996 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
14 Hb_001274_010 0.1036645662 - - -
15 Hb_129358_010 0.1050877987 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
16 Hb_000483_170 0.1278372863 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
17 Hb_046609_010 0.1355004345 - - -
18 Hb_000589_430 0.1401617138 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
19 Hb_062858_010 0.1476750557 - - heat-shock protein, putative [Ricinus communis]
20 Hb_001792_010 0.1631179416 - - Uncharacterized protein TCM_043787 [Theobroma cacao]

Gene co-expression network

sample Hb_010272_020 Hb_010272_020 Hb_073171_060 Hb_073171_060 Hb_010272_020--Hb_073171_060 Hb_000055_100 Hb_000055_100 Hb_010272_020--Hb_000055_100 Hb_000368_130 Hb_000368_130 Hb_010272_020--Hb_000368_130 Hb_150498_010 Hb_150498_010 Hb_010272_020--Hb_150498_010 Hb_088224_010 Hb_088224_010 Hb_010272_020--Hb_088224_010 Hb_000245_240 Hb_000245_240 Hb_010272_020--Hb_000245_240 Hb_073171_060--Hb_000055_100 Hb_073171_060--Hb_000368_130 Hb_073171_060--Hb_088224_010 Hb_073171_060--Hb_000245_240 Hb_000085_110 Hb_000085_110 Hb_073171_060--Hb_000085_110 Hb_000055_100--Hb_000368_130 Hb_000055_100--Hb_088224_010 Hb_000055_100--Hb_000245_240 Hb_000055_100--Hb_000085_110 Hb_000368_130--Hb_088224_010 Hb_000368_130--Hb_000245_240 Hb_000368_130--Hb_000085_110 Hb_003362_010 Hb_003362_010 Hb_150498_010--Hb_003362_010 Hb_150498_010--Hb_073171_060 Hb_007639_010 Hb_007639_010 Hb_150498_010--Hb_007639_010 Hb_150498_010--Hb_000055_100 Hb_150498_010--Hb_000368_130 Hb_088224_010--Hb_000245_240 Hb_088224_010--Hb_000085_110 Hb_000245_240--Hb_000085_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0259685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00932888 0

CAGE analysis