Hb_003362_010

Information

Type -
Description -
Location Contig3362: 335-7443
Sequence    

Annotation

kegg
ID crb:CARUB_v10006467mg
description hypothetical protein
nr
ID XP_010104742.1
description Actin-related protein 2/3 complex subunit 4 [Morus notabilis]
swissprot
ID F4JUL9
description Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana GN=ARPC4 PE=1 SV=1
trembl
ID W9RXJ2
description Actin-related protein 2/3 complex subunit 4 OS=Morus notabilis GN=L484_021429 PE=4 SV=1
Gene Ontology
ID GO:0005737
description actin-related protein 2 3 complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_010 0.0 - - Actin-related protein 2/3 complex subunit 4 [Morus notabilis]
2 Hb_150498_010 0.0154917761 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
3 Hb_007639_010 0.0348173134 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
4 Hb_010272_020 0.0438767491 - - hypothetical protein VITISV_030841 [Vitis vinifera]
5 Hb_073171_060 0.0555162708 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
6 Hb_129358_010 0.0614040525 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
7 Hb_000055_100 0.0683310637 - - polyprotein [Oryza australiensis]
8 Hb_000368_130 0.0691001457 - - conserved hypothetical protein [Ricinus communis]
9 Hb_088224_010 0.0738059936 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
10 Hb_000245_240 0.0750468889 - - -
11 Hb_000085_110 0.0759819725 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
12 Hb_046609_010 0.0920159095 - - -
13 Hb_004888_050 0.1127320035 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_007586_020 0.1143331812 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_157349_010 0.1383703708 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
16 Hb_001274_010 0.1472045055 - - -
17 Hb_062858_010 0.1584842945 - - heat-shock protein, putative [Ricinus communis]
18 Hb_000483_170 0.1712451563 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
19 Hb_000589_430 0.1834957381 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
20 Hb_001792_010 0.2063034176 - - Uncharacterized protein TCM_043787 [Theobroma cacao]

Gene co-expression network

sample Hb_003362_010 Hb_003362_010 Hb_150498_010 Hb_150498_010 Hb_003362_010--Hb_150498_010 Hb_007639_010 Hb_007639_010 Hb_003362_010--Hb_007639_010 Hb_010272_020 Hb_010272_020 Hb_003362_010--Hb_010272_020 Hb_073171_060 Hb_073171_060 Hb_003362_010--Hb_073171_060 Hb_129358_010 Hb_129358_010 Hb_003362_010--Hb_129358_010 Hb_000055_100 Hb_000055_100 Hb_003362_010--Hb_000055_100 Hb_150498_010--Hb_010272_020 Hb_150498_010--Hb_073171_060 Hb_150498_010--Hb_007639_010 Hb_150498_010--Hb_000055_100 Hb_000368_130 Hb_000368_130 Hb_150498_010--Hb_000368_130 Hb_007639_010--Hb_129358_010 Hb_046609_010 Hb_046609_010 Hb_007639_010--Hb_046609_010 Hb_007639_010--Hb_010272_020 Hb_007639_010--Hb_073171_060 Hb_010272_020--Hb_073171_060 Hb_010272_020--Hb_000055_100 Hb_010272_020--Hb_000368_130 Hb_088224_010 Hb_088224_010 Hb_010272_020--Hb_088224_010 Hb_000245_240 Hb_000245_240 Hb_010272_020--Hb_000245_240 Hb_073171_060--Hb_000055_100 Hb_073171_060--Hb_000368_130 Hb_073171_060--Hb_088224_010 Hb_073171_060--Hb_000245_240 Hb_000085_110 Hb_000085_110 Hb_073171_060--Hb_000085_110 Hb_129358_010--Hb_046609_010 Hb_129358_010--Hb_150498_010 Hb_129358_010--Hb_010272_020 Hb_129358_010--Hb_073171_060 Hb_000055_100--Hb_000368_130 Hb_000055_100--Hb_088224_010 Hb_000055_100--Hb_000245_240 Hb_000055_100--Hb_000085_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.137689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0388478 0

CAGE analysis