Hb_000094_060

Information

Type -
Description -
Location Contig94: 29938-30839
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63078: 30246-31112
cDNA
(Sanger)
(ID:Location)		 007_K17.ab1: 30412-31092 , 009_N09.ab1: 30320-30934 , 010_A11.ab1: 30320-30934 , 010_A20.ab1: 30360-31069 , 019_O02.ab1: 30364-31092 , 025_A18.ab1: 30320-30934 , 030_N15.ab1: 30320-30934 , 048_N09.ab1: 30347-31069 , 053_N01.ab1: 30347-31069

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_060 0.0 - - -
2 Hb_017134_020 0.2124620624 - - -
3 Hb_001125_020 0.2349331576 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
4 Hb_042026_010 0.2369081468 - - RNA binding protein, putative [Ricinus communis]
5 Hb_032419_020 0.2381636789 - - PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
6 Hb_174005_010 0.241222925 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
7 Hb_000696_320 0.2428199657 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
8 Hb_179112_010 0.2456609002 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
9 Hb_006692_050 0.2510444437 - - Chloroplastic lipocalin [Theobroma cacao]
10 Hb_000833_080 0.2571105189 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
11 Hb_000005_210 0.2576728139 - - -
12 Hb_000041_170 0.2576728139 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
13 Hb_000047_040 0.2576728139 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
14 Hb_000072_260 0.2576728139 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
15 Hb_000081_170 0.2576728139 - - -
16 Hb_000088_250 0.2576728139 - - -
17 Hb_000110_220 0.2576728139 - - -
18 Hb_000110_360 0.2576728139 - - -
19 Hb_000111_510 0.2576728139 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000122_170 0.2576728139 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000094_060 Hb_000094_060 Hb_017134_020 Hb_017134_020 Hb_000094_060--Hb_017134_020 Hb_001125_020 Hb_001125_020 Hb_000094_060--Hb_001125_020 Hb_042026_010 Hb_042026_010 Hb_000094_060--Hb_042026_010 Hb_032419_020 Hb_032419_020 Hb_000094_060--Hb_032419_020 Hb_174005_010 Hb_174005_010 Hb_000094_060--Hb_174005_010 Hb_000696_320 Hb_000696_320 Hb_000094_060--Hb_000696_320 Hb_017134_020--Hb_174005_010 Hb_005735_010 Hb_005735_010 Hb_017134_020--Hb_005735_010 Hb_002988_020 Hb_002988_020 Hb_017134_020--Hb_002988_020 Hb_000510_070 Hb_000510_070 Hb_017134_020--Hb_000510_070 Hb_000005_210 Hb_000005_210 Hb_017134_020--Hb_000005_210 Hb_001385_050 Hb_001385_050 Hb_001125_020--Hb_001385_050 Hb_000116_080 Hb_000116_080 Hb_001125_020--Hb_000116_080 Hb_001125_020--Hb_000696_320 Hb_001206_070 Hb_001206_070 Hb_001125_020--Hb_001206_070 Hb_000833_080 Hb_000833_080 Hb_001125_020--Hb_000833_080 Hb_001125_020--Hb_000005_210 Hb_006692_050 Hb_006692_050 Hb_042026_010--Hb_006692_050 Hb_042026_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_042026_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_042026_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_042026_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_042026_010--Hb_000081_170 Hb_032419_020--Hb_000005_210 Hb_032419_020--Hb_000041_170 Hb_032419_020--Hb_000047_040 Hb_032419_020--Hb_000072_260 Hb_032419_020--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_032419_020--Hb_000088_250 Hb_053582_010 Hb_053582_010 Hb_174005_010--Hb_053582_010 Hb_174005_010--Hb_000005_210 Hb_174005_010--Hb_000041_170 Hb_174005_010--Hb_000047_040 Hb_174005_010--Hb_000072_260 Hb_174005_010--Hb_000081_170 Hb_000696_320--Hb_000833_080 Hb_043950_010 Hb_043950_010 Hb_000696_320--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_000696_320--Hb_173423_010 Hb_007545_160 Hb_007545_160 Hb_000696_320--Hb_007545_160 Hb_000580_040 Hb_000580_040 Hb_000696_320--Hb_000580_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.439312 0.220403 0 0.228648 9.84651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.539066 0 0

CAGE analysis