Hb_003952_140

Information

Type -
Description -
Location Contig3952: 110009-113798
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24960g
description hypothetical protein
nr
ID XP_006369537.1
description hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GUJ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_140 0.0 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
2 Hb_000252_030 0.2724166093 - - Heme-binding protein, putative [Ricinus communis]
3 Hb_179112_010 0.2724404249 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
4 Hb_001021_060 0.2866493771 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_123521_010 0.3222046891 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_108886_010 0.3463211917 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_183612_030 0.3516593747 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
8 Hb_000544_140 0.3649849861 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
9 Hb_006237_020 0.3680283342 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_001338_060 0.3729006191 - - -
11 Hb_140572_010 0.3736412663 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
12 Hb_185092_010 0.3795511163 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
13 Hb_001008_040 0.3818714444 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
14 Hb_000832_210 0.3845944563 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
15 Hb_010626_020 0.3880051744 - - -
16 Hb_000732_270 0.4014509437 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
17 Hb_005735_010 0.4015695266 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
18 Hb_000445_080 0.403898906 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
19 Hb_000042_140 0.4052464394 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
20 Hb_001660_020 0.4057331566 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]

Gene co-expression network

sample Hb_003952_140 Hb_003952_140 Hb_000252_030 Hb_000252_030 Hb_003952_140--Hb_000252_030 Hb_179112_010 Hb_179112_010 Hb_003952_140--Hb_179112_010 Hb_001021_060 Hb_001021_060 Hb_003952_140--Hb_001021_060 Hb_123521_010 Hb_123521_010 Hb_003952_140--Hb_123521_010 Hb_108886_010 Hb_108886_010 Hb_003952_140--Hb_108886_010 Hb_183612_030 Hb_183612_030 Hb_003952_140--Hb_183612_030 Hb_000252_030--Hb_108886_010 Hb_000252_030--Hb_001021_060 Hb_021419_050 Hb_021419_050 Hb_000252_030--Hb_021419_050 Hb_001338_060 Hb_001338_060 Hb_000252_030--Hb_001338_060 Hb_000042_140 Hb_000042_140 Hb_000252_030--Hb_000042_140 Hb_002988_020 Hb_002988_020 Hb_179112_010--Hb_002988_020 Hb_005735_010 Hb_005735_010 Hb_179112_010--Hb_005735_010 Hb_000230_340 Hb_000230_340 Hb_179112_010--Hb_000230_340 Hb_000094_060 Hb_000094_060 Hb_179112_010--Hb_000094_060 Hb_017134_020 Hb_017134_020 Hb_179112_010--Hb_017134_020 Hb_006344_010 Hb_006344_010 Hb_001021_060--Hb_006344_010 Hb_140572_010 Hb_140572_010 Hb_001021_060--Hb_140572_010 Hb_005914_240 Hb_005914_240 Hb_001021_060--Hb_005914_240 Hb_007753_020 Hb_007753_020 Hb_001021_060--Hb_007753_020 Hb_010626_020 Hb_010626_020 Hb_123521_010--Hb_010626_020 Hb_000544_140 Hb_000544_140 Hb_123521_010--Hb_000544_140 Hb_000370_010 Hb_000370_010 Hb_123521_010--Hb_000370_010 Hb_123521_010--Hb_140572_010 Hb_003446_040 Hb_003446_040 Hb_123521_010--Hb_003446_040 Hb_123521_010--Hb_006344_010 Hb_108886_010--Hb_001338_060 Hb_005045_040 Hb_005045_040 Hb_108886_010--Hb_005045_040 Hb_003025_070 Hb_003025_070 Hb_108886_010--Hb_003025_070 Hb_003777_010 Hb_003777_010 Hb_108886_010--Hb_003777_010 Hb_108886_010--Hb_021419_050 Hb_003321_020 Hb_003321_020 Hb_183612_030--Hb_003321_020 Hb_013429_020 Hb_013429_020 Hb_183612_030--Hb_013429_020 Hb_003117_040 Hb_003117_040 Hb_183612_030--Hb_003117_040 Hb_020580_010 Hb_020580_010 Hb_183612_030--Hb_020580_010 Hb_002735_020 Hb_002735_020 Hb_183612_030--Hb_002735_020 Hb_032299_060 Hb_032299_060 Hb_183612_030--Hb_032299_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0783726 0 0 0 0.212081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.123879 0.0285703 0

CAGE analysis