Hb_179112_010

Information

Type -
Description -
Location Contig179112: 156-494
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012487759.1
description PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NH61
description Brassinosteroid insensitive 1-like protein OS=Gossypium arboreum GN=F383_12883 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179112_010 0.0 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
2 Hb_002988_020 0.200668061 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
3 Hb_005735_010 0.2135708502 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
4 Hb_000230_340 0.2351477477 - - Transcription elongation factor, putative [Ricinus communis]
5 Hb_000094_060 0.2456609002 - - -
6 Hb_017134_020 0.2515225575 - - -
7 Hb_003952_140 0.2724404249 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
8 Hb_010172_060 0.2918514732 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
9 Hb_009265_020 0.3042371458 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000951_050 0.3091098098 - - -
11 Hb_173423_010 0.30920796 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000544_140 0.3107641492 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
13 Hb_174005_010 0.3238113705 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
14 Hb_000696_320 0.3256631455 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
15 Hb_001125_020 0.327615005 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
16 Hb_001021_060 0.329780192 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000903_030 0.3313464728 - - -
18 Hb_000833_080 0.3341398332 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
19 Hb_000510_070 0.3358454874 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Beta vulgaris subsp. vulgaris]
20 Hb_046609_010 0.3373303851 - - -

Gene co-expression network

sample Hb_179112_010 Hb_179112_010 Hb_002988_020 Hb_002988_020 Hb_179112_010--Hb_002988_020 Hb_005735_010 Hb_005735_010 Hb_179112_010--Hb_005735_010 Hb_000230_340 Hb_000230_340 Hb_179112_010--Hb_000230_340 Hb_000094_060 Hb_000094_060 Hb_179112_010--Hb_000094_060 Hb_017134_020 Hb_017134_020 Hb_179112_010--Hb_017134_020 Hb_003952_140 Hb_003952_140 Hb_179112_010--Hb_003952_140 Hb_002988_020--Hb_005735_010 Hb_002988_020--Hb_017134_020 Hb_000903_030 Hb_000903_030 Hb_002988_020--Hb_000903_030 Hb_002988_020--Hb_000230_340 Hb_032531_050 Hb_032531_050 Hb_002988_020--Hb_032531_050 Hb_005735_010--Hb_017134_020 Hb_000544_140 Hb_000544_140 Hb_005735_010--Hb_000544_140 Hb_005735_010--Hb_000094_060 Hb_001650_010 Hb_001650_010 Hb_005735_010--Hb_001650_010 Hb_046609_010 Hb_046609_010 Hb_000230_340--Hb_046609_010 Hb_129358_010 Hb_129358_010 Hb_000230_340--Hb_129358_010 Hb_007639_010 Hb_007639_010 Hb_000230_340--Hb_007639_010 Hb_003362_010 Hb_003362_010 Hb_000230_340--Hb_003362_010 Hb_000094_060--Hb_017134_020 Hb_001125_020 Hb_001125_020 Hb_000094_060--Hb_001125_020 Hb_042026_010 Hb_042026_010 Hb_000094_060--Hb_042026_010 Hb_032419_020 Hb_032419_020 Hb_000094_060--Hb_032419_020 Hb_174005_010 Hb_174005_010 Hb_000094_060--Hb_174005_010 Hb_000696_320 Hb_000696_320 Hb_000094_060--Hb_000696_320 Hb_017134_020--Hb_174005_010 Hb_000510_070 Hb_000510_070 Hb_017134_020--Hb_000510_070 Hb_000005_210 Hb_000005_210 Hb_017134_020--Hb_000005_210 Hb_000252_030 Hb_000252_030 Hb_003952_140--Hb_000252_030 Hb_001021_060 Hb_001021_060 Hb_003952_140--Hb_001021_060 Hb_123521_010 Hb_123521_010 Hb_003952_140--Hb_123521_010 Hb_108886_010 Hb_108886_010 Hb_003952_140--Hb_108886_010 Hb_183612_030 Hb_183612_030 Hb_003952_140--Hb_183612_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.106096 0 0 0 1.82758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.332035 0.0988461 0

CAGE analysis