Hb_000003_180

Information

Type -
Description -
Location Contig3: 111569-113164
Sequence    

Annotation

kegg
ID rcu:RCOM_1454080
description hypothetical protein
nr
ID XP_002513127.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1454080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000523_100 0.1856235687 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
3 Hb_000617_170 0.2076515812 - - -
4 Hb_000976_030 0.2076672428 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
5 Hb_088065_010 0.2131143046 - - hypothetical protein glysoja_007934 [Glycine soja]
6 Hb_003581_010 0.2137133526 - - hypothetical protein VITISV_004687 [Vitis vinifera]
7 Hb_130134_020 0.2158464243 - - -
8 Hb_001907_090 0.2213357533 - - -
9 Hb_046120_010 0.2219807187 - - -
10 Hb_126112_010 0.2238075297 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
11 Hb_128998_010 0.2315228932 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
12 Hb_000808_240 0.2328910656 - - -
13 Hb_001252_200 0.2337184849 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
14 Hb_000248_010 0.2353136514 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
15 Hb_169170_010 0.2387365884 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
16 Hb_058702_020 0.2405010248 - - PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
17 Hb_051424_010 0.2458891567 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
18 Hb_002084_010 0.2474592759 - - hypothetical protein VITISV_017990 [Vitis vinifera]
19 Hb_134310_020 0.2474884314 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
20 Hb_001235_060 0.247635805 - - -

Gene co-expression network

sample Hb_000003_180 Hb_000003_180 Hb_000523_100 Hb_000523_100 Hb_000003_180--Hb_000523_100 Hb_000617_170 Hb_000617_170 Hb_000003_180--Hb_000617_170 Hb_000976_030 Hb_000976_030 Hb_000003_180--Hb_000976_030 Hb_088065_010 Hb_088065_010 Hb_000003_180--Hb_088065_010 Hb_003581_010 Hb_003581_010 Hb_000003_180--Hb_003581_010 Hb_130134_020 Hb_130134_020 Hb_000003_180--Hb_130134_020 Hb_000523_100--Hb_088065_010 Hb_126112_010 Hb_126112_010 Hb_000523_100--Hb_126112_010 Hb_088774_010 Hb_088774_010 Hb_000523_100--Hb_088774_010 Hb_000295_090 Hb_000295_090 Hb_000523_100--Hb_000295_090 Hb_071923_010 Hb_071923_010 Hb_000523_100--Hb_071923_010 Hb_122567_020 Hb_122567_020 Hb_000617_170--Hb_122567_020 Hb_000617_170--Hb_000976_030 Hb_005933_010 Hb_005933_010 Hb_000617_170--Hb_005933_010 Hb_134310_020 Hb_134310_020 Hb_000617_170--Hb_134310_020 Hb_000248_010 Hb_000248_010 Hb_000617_170--Hb_000248_010 Hb_169170_010 Hb_169170_010 Hb_000617_170--Hb_169170_010 Hb_002960_050 Hb_002960_050 Hb_000976_030--Hb_002960_050 Hb_178041_010 Hb_178041_010 Hb_000976_030--Hb_178041_010 Hb_051437_010 Hb_051437_010 Hb_000976_030--Hb_051437_010 Hb_000976_030--Hb_000248_010 Hb_000976_030--Hb_169170_010 Hb_073559_010 Hb_073559_010 Hb_088065_010--Hb_073559_010 Hb_088065_010--Hb_000248_010 Hb_088065_010--Hb_088774_010 Hb_005965_010 Hb_005965_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020 Hb_000001_040 Hb_000001_040 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_000265_130 Hb_000265_130 Hb_003581_010--Hb_000265_130 Hb_128998_010 Hb_128998_010 Hb_003581_010--Hb_128998_010 Hb_000007_460 Hb_000007_460 Hb_003581_010--Hb_000007_460 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_130134_020--Hb_134310_020 Hb_130134_020--Hb_000295_090 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39714 2.58806 1.01432 2.22618 1.36701 18.0664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.946097 1.51487 0 1.42399 0.930168

CAGE analysis