Hb_001864_030

Information

Type -
Description -
Location Contig1864: 26106-29496
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03180g
description POPTRDRAFT_647677; Thioredoxin-like 4 family protein
nr
ID AAD33596.1
description thioredoxin h [Hevea brasiliensis]
swissprot
ID Q8LDI5
description Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana GN=CXXS1 PE=2 SV=2
trembl
ID Q9XF70
description Thioredoxin h OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0009987
description thioredoxin-like protein cxxs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_030 0.0 - - thioredoxin h [Hevea brasiliensis]
2 Hb_001047_140 0.1619088591 - - -
3 Hb_000331_310 0.1844949186 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
4 Hb_001623_240 0.2082596157 - - hypothetical protein VITISV_004933 [Vitis vinifera]
5 Hb_000453_210 0.2084707113 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
6 Hb_001047_150 0.2123917493 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
7 Hb_002301_240 0.2130350155 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
8 Hb_004607_140 0.2135054044 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
9 Hb_056196_070 0.213787879 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
10 Hb_000163_200 0.2186864782 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
11 Hb_031527_050 0.2186942733 - - PREDICTED: universal stress protein A-like protein [Populus euphratica]
12 Hb_004242_080 0.2193404833 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
13 Hb_000162_170 0.2208288409 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
14 Hb_000705_300 0.2230376101 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
15 Hb_004712_180 0.224570034 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003057_050 0.2259246668 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
17 Hb_006501_110 0.2268792638 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
18 Hb_011689_040 0.2296957004 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
19 Hb_000445_330 0.2314072404 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000613_200 0.2318811821 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001864_030 Hb_001864_030 Hb_001047_140 Hb_001047_140 Hb_001864_030--Hb_001047_140 Hb_000331_310 Hb_000331_310 Hb_001864_030--Hb_000331_310 Hb_001623_240 Hb_001623_240 Hb_001864_030--Hb_001623_240 Hb_000453_210 Hb_000453_210 Hb_001864_030--Hb_000453_210 Hb_001047_150 Hb_001047_150 Hb_001864_030--Hb_001047_150 Hb_002301_240 Hb_002301_240 Hb_001864_030--Hb_002301_240 Hb_000331_320 Hb_000331_320 Hb_001047_140--Hb_000331_320 Hb_008667_050 Hb_008667_050 Hb_001047_140--Hb_008667_050 Hb_001047_140--Hb_000453_210 Hb_001047_140--Hb_000331_310 Hb_004502_080 Hb_004502_080 Hb_001047_140--Hb_004502_080 Hb_084934_010 Hb_084934_010 Hb_000331_310--Hb_084934_010 Hb_002918_280 Hb_002918_280 Hb_000331_310--Hb_002918_280 Hb_004607_140 Hb_004607_140 Hb_000331_310--Hb_004607_140 Hb_000163_200 Hb_000163_200 Hb_000331_310--Hb_000163_200 Hb_010883_210 Hb_010883_210 Hb_000331_310--Hb_010883_210 Hb_003058_070 Hb_003058_070 Hb_000331_310--Hb_003058_070 Hb_011931_050 Hb_011931_050 Hb_001623_240--Hb_011931_050 Hb_002529_100 Hb_002529_100 Hb_001623_240--Hb_002529_100 Hb_001623_240--Hb_004607_140 Hb_004724_140 Hb_004724_140 Hb_001623_240--Hb_004724_140 Hb_001623_240--Hb_000163_200 Hb_000699_110 Hb_000699_110 Hb_001623_240--Hb_000699_110 Hb_001143_010 Hb_001143_010 Hb_000453_210--Hb_001143_010 Hb_001495_060 Hb_001495_060 Hb_000453_210--Hb_001495_060 Hb_002685_180 Hb_002685_180 Hb_000453_210--Hb_002685_180 Hb_000453_210--Hb_008667_050 Hb_003209_030 Hb_003209_030 Hb_000453_210--Hb_003209_030 Hb_174865_030 Hb_174865_030 Hb_001047_150--Hb_174865_030 Hb_115241_010 Hb_115241_010 Hb_001047_150--Hb_115241_010 Hb_002929_050 Hb_002929_050 Hb_001047_150--Hb_002929_050 Hb_011689_040 Hb_011689_040 Hb_001047_150--Hb_011689_040 Hb_000987_120 Hb_000987_120 Hb_001047_150--Hb_000987_120 Hb_000086_060 Hb_000086_060 Hb_001047_150--Hb_000086_060 Hb_019033_010 Hb_019033_010 Hb_002301_240--Hb_019033_010 Hb_000086_330 Hb_000086_330 Hb_002301_240--Hb_000086_330 Hb_025246_010 Hb_025246_010 Hb_002301_240--Hb_025246_010 Hb_056196_070 Hb_056196_070 Hb_002301_240--Hb_056196_070 Hb_002835_220 Hb_002835_220 Hb_002301_240--Hb_002835_220 Hb_070820_010 Hb_070820_010 Hb_002301_240--Hb_070820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3029 15.6073 1.67919 12.4299 34.4045 18.7688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.0615 31.2784 7.92671 5.65931 0.310522

CAGE analysis