Hb_001047_150

Information

Type -
Description -
Location Contig1047: 94320-94967
Sequence    

Annotation

kegg
ID rcu:RCOM_0851770
description ATP binding protein, putative
nr
ID XP_012092222.1
description PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
swissprot
ID Q55ED4
description UPF0396 protein OS=Dictyostelium discoideum GN=DDB_G0269284 PE=3 SV=1
trembl
ID A0A067JC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21917 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_150 0.0 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
2 Hb_174865_030 0.1435704543 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
3 Hb_115241_010 0.1541489436 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
4 Hb_002929_050 0.1553807736 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
5 Hb_011689_040 0.1566381273 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
6 Hb_000987_120 0.1598938226 - - PREDICTED: protein SIEL [Jatropha curcas]
7 Hb_000086_060 0.1604979958 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
8 Hb_000522_080 0.1626975791 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
9 Hb_000446_030 0.1649966789 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_000261_440 0.1735585379 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_000221_210 0.1748586588 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
12 Hb_022092_120 0.1752094812 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
13 Hb_002540_030 0.1767850183 - - hypothetical protein 32 [Hevea brasiliensis]
14 Hb_009493_010 0.1774324943 - - Minor allergen Alt a, putative [Ricinus communis]
15 Hb_001538_100 0.1811854176 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
16 Hb_000700_130 0.1817959693 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
17 Hb_001541_270 0.18497954 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
18 Hb_003906_100 0.1873865928 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
19 Hb_000696_340 0.1880906267 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
20 Hb_004242_080 0.188210599 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]

Gene co-expression network

sample Hb_001047_150 Hb_001047_150 Hb_174865_030 Hb_174865_030 Hb_001047_150--Hb_174865_030 Hb_115241_010 Hb_115241_010 Hb_001047_150--Hb_115241_010 Hb_002929_050 Hb_002929_050 Hb_001047_150--Hb_002929_050 Hb_011689_040 Hb_011689_040 Hb_001047_150--Hb_011689_040 Hb_000987_120 Hb_000987_120 Hb_001047_150--Hb_000987_120 Hb_000086_060 Hb_000086_060 Hb_001047_150--Hb_000086_060 Hb_174865_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_174865_030--Hb_001722_100 Hb_002540_030 Hb_002540_030 Hb_174865_030--Hb_002540_030 Hb_000446_030 Hb_000446_030 Hb_174865_030--Hb_000446_030 Hb_001235_190 Hb_001235_190 Hb_174865_030--Hb_001235_190 Hb_000522_080 Hb_000522_080 Hb_174865_030--Hb_000522_080 Hb_000975_360 Hb_000975_360 Hb_115241_010--Hb_000975_360 Hb_001564_080 Hb_001564_080 Hb_115241_010--Hb_001564_080 Hb_001894_050 Hb_001894_050 Hb_115241_010--Hb_001894_050 Hb_001189_140 Hb_001189_140 Hb_115241_010--Hb_001189_140 Hb_021888_050 Hb_021888_050 Hb_115241_010--Hb_021888_050 Hb_005653_060 Hb_005653_060 Hb_115241_010--Hb_005653_060 Hb_001538_100 Hb_001538_100 Hb_002929_050--Hb_001538_100 Hb_002929_050--Hb_000446_030 Hb_002929_050--Hb_174865_030 Hb_002929_050--Hb_002540_030 Hb_003861_120 Hb_003861_120 Hb_002929_050--Hb_003861_120 Hb_000483_250 Hb_000483_250 Hb_002929_050--Hb_000483_250 Hb_005215_030 Hb_005215_030 Hb_011689_040--Hb_005215_030 Hb_011689_040--Hb_000522_080 Hb_000162_170 Hb_000162_170 Hb_011689_040--Hb_000162_170 Hb_000696_340 Hb_000696_340 Hb_011689_040--Hb_000696_340 Hb_000395_080 Hb_000395_080 Hb_011689_040--Hb_000395_080 Hb_004242_080 Hb_004242_080 Hb_011689_040--Hb_004242_080 Hb_000307_090 Hb_000307_090 Hb_000987_120--Hb_000307_090 Hb_000987_120--Hb_001722_100 Hb_000987_120--Hb_000522_080 Hb_005736_060 Hb_005736_060 Hb_000987_120--Hb_005736_060 Hb_003185_080 Hb_003185_080 Hb_000987_120--Hb_003185_080 Hb_000221_210 Hb_000221_210 Hb_000086_060--Hb_000221_210 Hb_005941_040 Hb_005941_040 Hb_000086_060--Hb_005941_040 Hb_000261_440 Hb_000261_440 Hb_000086_060--Hb_000261_440 Hb_000086_060--Hb_000987_120 Hb_000086_060--Hb_005653_060 Hb_000212_350 Hb_000212_350 Hb_000086_060--Hb_000212_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.49951 10.7855 1.50232 2.15205 7.08518 4.77163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8066 11.8446 8.52556 5.58992 0.555419

CAGE analysis