Hb_004453_030

Information

Type -
Description -
Location Contig4453: 5801-14825
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26790g
description POPTRDRAFT_561871; hypothetical protein
nr
ID XP_002308655.2
description hypothetical protein POPTR_0006s26790g [Populus trichocarpa]
swissprot
ID Q8H0V5
description Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 OS=Arabidopsis thaliana GN=OCP3 PE=1 SV=1
trembl
ID B9HA31
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26790g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_030 0.0 - - hypothetical protein POPTR_0006s26790g [Populus trichocarpa]
2 Hb_005736_040 0.29928937 - - -
3 Hb_000011_170 0.3080723466 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
4 Hb_032202_030 0.316267553 - - -
5 Hb_173902_040 0.3272644104 - - -
6 Hb_037964_010 0.329426989 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
7 Hb_008507_050 0.333168357 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
8 Hb_000173_100 0.3418381184 - - -
9 Hb_000088_210 0.3511032595 - - hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
10 Hb_002175_040 0.3556560596 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
11 Hb_116195_010 0.3559482906 - - -
12 Hb_003001_100 0.3591189769 - - PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
13 Hb_000200_320 0.3623419138 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
14 Hb_001787_040 0.3676899563 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_004230_030 0.372102209 - - hypothetical protein CISIN_1g043871mg [Citrus sinensis]
16 Hb_001493_110 0.378446283 - - hypothetical protein JCGZ_24625 [Jatropha curcas]
17 Hb_000445_190 0.3839828554 - - -
18 Hb_001265_010 0.3862312129 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
19 Hb_159085_010 0.3878261838 - - -
20 Hb_000803_040 0.3878289659 - - -

Gene co-expression network

sample Hb_004453_030 Hb_004453_030 Hb_005736_040 Hb_005736_040 Hb_004453_030--Hb_005736_040 Hb_000011_170 Hb_000011_170 Hb_004453_030--Hb_000011_170 Hb_032202_030 Hb_032202_030 Hb_004453_030--Hb_032202_030 Hb_173902_040 Hb_173902_040 Hb_004453_030--Hb_173902_040 Hb_037964_010 Hb_037964_010 Hb_004453_030--Hb_037964_010 Hb_008507_050 Hb_008507_050 Hb_004453_030--Hb_008507_050 Hb_159085_010 Hb_159085_010 Hb_005736_040--Hb_159085_010 Hb_005736_040--Hb_037964_010 Hb_007904_270 Hb_007904_270 Hb_005736_040--Hb_007904_270 Hb_001865_110 Hb_001865_110 Hb_005736_040--Hb_001865_110 Hb_009467_030 Hb_009467_030 Hb_005736_040--Hb_009467_030 Hb_000008_260 Hb_000008_260 Hb_005736_040--Hb_000008_260 Hb_061390_010 Hb_061390_010 Hb_000011_170--Hb_061390_010 Hb_008880_010 Hb_008880_010 Hb_000011_170--Hb_008880_010 Hb_115350_010 Hb_115350_010 Hb_000011_170--Hb_115350_010 Hb_002779_020 Hb_002779_020 Hb_000011_170--Hb_002779_020 Hb_136696_010 Hb_136696_010 Hb_000011_170--Hb_136696_010 Hb_000803_040 Hb_000803_040 Hb_032202_030--Hb_000803_040 Hb_148891_010 Hb_148891_010 Hb_032202_030--Hb_148891_010 Hb_000445_190 Hb_000445_190 Hb_032202_030--Hb_000445_190 Hb_000567_040 Hb_000567_040 Hb_032202_030--Hb_000567_040 Hb_002685_180 Hb_002685_180 Hb_032202_030--Hb_002685_180 Hb_000529_240 Hb_000529_240 Hb_032202_030--Hb_000529_240 Hb_001493_110 Hb_001493_110 Hb_173902_040--Hb_001493_110 Hb_003702_040 Hb_003702_040 Hb_173902_040--Hb_003702_040 Hb_006096_040 Hb_006096_040 Hb_173902_040--Hb_006096_040 Hb_001519_180 Hb_001519_180 Hb_173902_040--Hb_001519_180 Hb_005545_030 Hb_005545_030 Hb_173902_040--Hb_005545_030 Hb_000789_100 Hb_000789_100 Hb_173902_040--Hb_000789_100 Hb_037964_010--Hb_000008_260 Hb_037964_010--Hb_009467_030 Hb_001787_040 Hb_001787_040 Hb_037964_010--Hb_001787_040 Hb_006452_150 Hb_006452_150 Hb_037964_010--Hb_006452_150 Hb_000200_320 Hb_000200_320 Hb_037964_010--Hb_000200_320 Hb_116195_010 Hb_116195_010 Hb_008507_050--Hb_116195_010 Hb_002759_180 Hb_002759_180 Hb_008507_050--Hb_002759_180 Hb_008507_050--Hb_001493_110 Hb_004324_020 Hb_004324_020 Hb_008507_050--Hb_004324_020 Hb_142392_010 Hb_142392_010 Hb_008507_050--Hb_142392_010 Hb_005529_010 Hb_005529_010 Hb_008507_050--Hb_005529_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0550506 0 0.132555 0 0.26631 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.386144 0.101125 0 0 0

CAGE analysis