Hb_004204_180

Information

Type -
Description -
Location Contig4204: 125125-125409
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41540: 120668-124577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004204_180 0.0 - - -
2 Hb_000164_090 0.2493709064 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
3 Hb_012019_040 0.2652304914 - - -
4 Hb_000540_220 0.2675131908 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
5 Hb_076223_020 0.2743669643 - - -
6 Hb_104641_010 0.2771292928 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_011942_030 0.278243668 - - -
8 Hb_002897_020 0.284481848 - - phosphate transporter [Manihot esculenta]
9 Hb_173479_010 0.286657214 - - -
10 Hb_003687_260 0.2867058443 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
11 Hb_002539_060 0.2867301613 - - -
12 Hb_049719_010 0.2868642217 - - ATP binding protein, putative [Ricinus communis]
13 Hb_081212_010 0.287238704 - - -
14 Hb_001277_200 0.2873211731 - - cation-transporting atpase plant, putative [Ricinus communis]
15 Hb_019429_010 0.2876936812 - - conserved hypothetical protein [Ricinus communis]
16 Hb_072376_010 0.2881497801 - - -
17 Hb_000963_100 0.2881774772 - - Protein SUA5, putative [Ricinus communis]
18 Hb_052135_040 0.2881836108 - - -
19 Hb_095589_010 0.288210414 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_000473_130 0.2882229645 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]

Gene co-expression network

sample Hb_004204_180 Hb_004204_180 Hb_000164_090 Hb_000164_090 Hb_004204_180--Hb_000164_090 Hb_012019_040 Hb_012019_040 Hb_004204_180--Hb_012019_040 Hb_000540_220 Hb_000540_220 Hb_004204_180--Hb_000540_220 Hb_076223_020 Hb_076223_020 Hb_004204_180--Hb_076223_020 Hb_104641_010 Hb_104641_010 Hb_004204_180--Hb_104641_010 Hb_011942_030 Hb_011942_030 Hb_004204_180--Hb_011942_030 Hb_000164_090--Hb_000540_220 Hb_007188_060 Hb_007188_060 Hb_000164_090--Hb_007188_060 Hb_163508_010 Hb_163508_010 Hb_000164_090--Hb_163508_010 Hb_002897_020 Hb_002897_020 Hb_000164_090--Hb_002897_020 Hb_004800_210 Hb_004800_210 Hb_000164_090--Hb_004800_210 Hb_012019_040--Hb_076223_020 Hb_002539_030 Hb_002539_030 Hb_012019_040--Hb_002539_030 Hb_008725_160 Hb_008725_160 Hb_012019_040--Hb_008725_160 Hb_004117_250 Hb_004117_250 Hb_012019_040--Hb_004117_250 Hb_001277_200 Hb_001277_200 Hb_012019_040--Hb_001277_200 Hb_000540_220--Hb_163508_010 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000540_220--Hb_007188_060 Hb_000221_230 Hb_000221_230 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_076223_020--Hb_002539_030 Hb_002539_060 Hb_002539_060 Hb_076223_020--Hb_002539_060 Hb_003687_260 Hb_003687_260 Hb_076223_020--Hb_003687_260 Hb_049719_010 Hb_049719_010 Hb_076223_020--Hb_049719_010 Hb_001361_010 Hb_001361_010 Hb_104641_010--Hb_001361_010 Hb_074672_010 Hb_074672_010 Hb_104641_010--Hb_074672_010 Hb_171974_010 Hb_171974_010 Hb_104641_010--Hb_171974_010 Hb_000433_050 Hb_000433_050 Hb_104641_010--Hb_000433_050 Hb_120011_010 Hb_120011_010 Hb_104641_010--Hb_120011_010 Hb_000025_490 Hb_000025_490 Hb_104641_010--Hb_000025_490 Hb_011942_030--Hb_002897_020 Hb_039385_010 Hb_039385_010 Hb_011942_030--Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_011942_030--Hb_011903_030 Hb_000742_050 Hb_000742_050 Hb_011942_030--Hb_000742_050 Hb_000629_050 Hb_000629_050 Hb_011942_030--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_011942_030--Hb_005417_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.507371 4.46419 3.45223 0 0.358897 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.427651 0 0 0.157184 0

CAGE analysis