Hb_004117_250

Information

Type -
Description -
Location Contig4117: 173392-174521
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10850g
description POPTRDRAFT_653202; hypothetical protein
nr
ID XP_011019014.1
description PREDICTED: expansin-A8-like [Populus euphratica]
swissprot
ID O22874
description Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1
trembl
ID B9HDI3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10850g PE=3 SV=2
Gene Ontology
ID GO:0005576
description alpha-expansin 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_250 0.0 - - PREDICTED: expansin-A8-like [Populus euphratica]
2 Hb_004524_060 0.0691194056 - - hypothetical protein VITISV_039334 [Vitis vinifera]
3 Hb_000589_370 0.1383309385 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
4 Hb_003292_060 0.1826286079 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
5 Hb_002897_020 0.2570248807 - - phosphate transporter [Manihot esculenta]
6 Hb_000787_010 0.2596381959 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
7 Hb_049884_010 0.2599856241 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_002234_230 0.2603351588 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
9 Hb_004524_070 0.2680932936 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
10 Hb_021650_050 0.268825087 - - hypothetical protein RCOM_0852210 [Ricinus communis]
11 Hb_004800_210 0.2736643392 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
12 Hb_011942_030 0.2753343421 - - -
13 Hb_028639_040 0.2769039983 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
14 Hb_009302_010 0.2806194403 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_001124_030 0.2845623799 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
16 Hb_004021_090 0.2848670544 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
17 Hb_004204_180 0.2903700071 - - -
18 Hb_000164_090 0.3080726792 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
19 Hb_001004_050 0.3102012551 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
20 Hb_000815_180 0.318820866 - - -

Gene co-expression network

sample Hb_004117_250 Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_004117_250--Hb_004524_060 Hb_000589_370 Hb_000589_370 Hb_004117_250--Hb_000589_370 Hb_003292_060 Hb_003292_060 Hb_004117_250--Hb_003292_060 Hb_002897_020 Hb_002897_020 Hb_004117_250--Hb_002897_020 Hb_000787_010 Hb_000787_010 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_004524_060--Hb_000589_370 Hb_004524_060--Hb_003292_060 Hb_028639_040 Hb_028639_040 Hb_004524_060--Hb_028639_040 Hb_004524_060--Hb_002897_020 Hb_021650_050 Hb_021650_050 Hb_004524_060--Hb_021650_050 Hb_000589_370--Hb_003292_060 Hb_002234_230 Hb_002234_230 Hb_000589_370--Hb_002234_230 Hb_000589_370--Hb_021650_050 Hb_004524_070 Hb_004524_070 Hb_000589_370--Hb_004524_070 Hb_003292_060--Hb_002234_230 Hb_001124_030 Hb_001124_030 Hb_003292_060--Hb_001124_030 Hb_003292_060--Hb_000787_010 Hb_115513_030 Hb_115513_030 Hb_002897_020--Hb_115513_030 Hb_011942_030 Hb_011942_030 Hb_002897_020--Hb_011942_030 Hb_000836_180 Hb_000836_180 Hb_002897_020--Hb_000836_180 Hb_000433_050 Hb_000433_050 Hb_002897_020--Hb_000433_050 Hb_104641_010 Hb_104641_010 Hb_002897_020--Hb_104641_010 Hb_179363_010 Hb_179363_010 Hb_002897_020--Hb_179363_010 Hb_099990_030 Hb_099990_030 Hb_000787_010--Hb_099990_030 Hb_004021_090 Hb_004021_090 Hb_000787_010--Hb_004021_090 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_000787_010--Hb_028639_040 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_164225_010 Hb_164225_010 Hb_049884_010--Hb_164225_010 Hb_049884_010--Hb_011942_030 Hb_007188_060 Hb_007188_060 Hb_049884_010--Hb_007188_060 Hb_004800_210 Hb_004800_210 Hb_049884_010--Hb_004800_210 Hb_114250_010 Hb_114250_010 Hb_049884_010--Hb_114250_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0618851 0.125173 0.141378 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis