Hb_004524_060

Information

Type -
Description -
Location Contig4524: 23424-23786
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN81330.1
description hypothetical protein VITISV_039334 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BPB7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039334 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43216: 23288-23493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004524_060 0.0 - - hypothetical protein VITISV_039334 [Vitis vinifera]
2 Hb_004117_250 0.0691194056 - - PREDICTED: expansin-A8-like [Populus euphratica]
3 Hb_000589_370 0.1544871313 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
4 Hb_003292_060 0.227333004 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
5 Hb_028639_040 0.2385225139 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
6 Hb_002897_020 0.2530965458 - - phosphate transporter [Manihot esculenta]
7 Hb_021650_050 0.2533846334 - - hypothetical protein RCOM_0852210 [Ricinus communis]
8 Hb_004524_070 0.2666890006 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
9 Hb_000787_010 0.2742415597 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
10 Hb_002234_230 0.2771867602 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
11 Hb_004021_090 0.2878613236 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
12 Hb_049884_010 0.2878991905 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_123475_020 0.2899163733 - - -
14 Hb_034468_010 0.2930960671 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
15 Hb_003813_150 0.2930984193 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
16 Hb_001627_020 0.294386671 - - -
17 Hb_000083_030 0.2946481011 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
18 Hb_004800_210 0.2948146323 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
19 Hb_055235_010 0.295651434 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_004204_180 0.2985050532 - - -

Gene co-expression network

sample Hb_004524_060 Hb_004524_060 Hb_004117_250 Hb_004117_250 Hb_004524_060--Hb_004117_250 Hb_000589_370 Hb_000589_370 Hb_004524_060--Hb_000589_370 Hb_003292_060 Hb_003292_060 Hb_004524_060--Hb_003292_060 Hb_028639_040 Hb_028639_040 Hb_004524_060--Hb_028639_040 Hb_002897_020 Hb_002897_020 Hb_004524_060--Hb_002897_020 Hb_021650_050 Hb_021650_050 Hb_004524_060--Hb_021650_050 Hb_004117_250--Hb_000589_370 Hb_004117_250--Hb_003292_060 Hb_004117_250--Hb_002897_020 Hb_000787_010 Hb_000787_010 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_000589_370--Hb_003292_060 Hb_002234_230 Hb_002234_230 Hb_000589_370--Hb_002234_230 Hb_000589_370--Hb_021650_050 Hb_004524_070 Hb_004524_070 Hb_000589_370--Hb_004524_070 Hb_003292_060--Hb_002234_230 Hb_001124_030 Hb_001124_030 Hb_003292_060--Hb_001124_030 Hb_003292_060--Hb_000787_010 Hb_123475_020 Hb_123475_020 Hb_028639_040--Hb_123475_020 Hb_004021_090 Hb_004021_090 Hb_028639_040--Hb_004021_090 Hb_028639_040--Hb_000787_010 Hb_001762_050 Hb_001762_050 Hb_028639_040--Hb_001762_050 Hb_002874_210 Hb_002874_210 Hb_028639_040--Hb_002874_210 Hb_003768_060 Hb_003768_060 Hb_028639_040--Hb_003768_060 Hb_115513_030 Hb_115513_030 Hb_002897_020--Hb_115513_030 Hb_011942_030 Hb_011942_030 Hb_002897_020--Hb_011942_030 Hb_000836_180 Hb_000836_180 Hb_002897_020--Hb_000836_180 Hb_000433_050 Hb_000433_050 Hb_002897_020--Hb_000433_050 Hb_104641_010 Hb_104641_010 Hb_002897_020--Hb_104641_010 Hb_179363_010 Hb_179363_010 Hb_002897_020--Hb_179363_010 Hb_075351_010 Hb_075351_010 Hb_021650_050--Hb_075351_010 Hb_021650_050--Hb_002234_230 Hb_021650_050--Hb_004117_250 Hb_021650_050--Hb_003292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134205 0.271465 0.425039 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis