Hb_001878_020

Information

Type -
Description -
Location Contig1878: 36220-38279
Sequence    

Annotation

kegg
ID vvi:104878104
description uncharacterized LOC104878104
nr
ID XP_012065099.1
description PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A0D2U001
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G092500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001878_020 0.0 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
2 Hb_001242_180 0.1478809387 - - choline/ethanolamine kinase, putative [Ricinus communis]
3 Hb_000454_080 0.1983963208 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
4 Hb_005348_090 0.1997273894 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
5 Hb_002400_020 0.2061949251 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
6 Hb_002311_160 0.209775495 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
7 Hb_124677_020 0.2100343045 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
8 Hb_002374_200 0.2116401511 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
9 Hb_001579_070 0.2200760437 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
10 Hb_119316_020 0.2223944686 - - -
11 Hb_000172_410 0.2232132378 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_001623_410 0.2242500106 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
13 Hb_061908_030 0.2243134693 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
14 Hb_011930_120 0.2258464958 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
15 Hb_007904_290 0.2277819183 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
16 Hb_000003_240 0.227892845 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002151_130 0.2279382915 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
18 Hb_000521_190 0.228308195 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
19 Hb_109515_010 0.2284458647 - - -
20 Hb_000086_620 0.2292034665 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001878_020 Hb_001878_020 Hb_001242_180 Hb_001242_180 Hb_001878_020--Hb_001242_180 Hb_000454_080 Hb_000454_080 Hb_001878_020--Hb_000454_080 Hb_005348_090 Hb_005348_090 Hb_001878_020--Hb_005348_090 Hb_002400_020 Hb_002400_020 Hb_001878_020--Hb_002400_020 Hb_002311_160 Hb_002311_160 Hb_001878_020--Hb_002311_160 Hb_124677_020 Hb_124677_020 Hb_001878_020--Hb_124677_020 Hb_000003_240 Hb_000003_240 Hb_001242_180--Hb_000003_240 Hb_001579_070 Hb_001579_070 Hb_001242_180--Hb_001579_070 Hb_001242_180--Hb_005348_090 Hb_001242_180--Hb_000454_080 Hb_002217_190 Hb_002217_190 Hb_001242_180--Hb_002217_190 Hb_000071_090 Hb_000071_090 Hb_000454_080--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_000454_080--Hb_000836_420 Hb_000495_050 Hb_000495_050 Hb_000454_080--Hb_000495_050 Hb_000985_140 Hb_000985_140 Hb_000454_080--Hb_000985_140 Hb_008406_070 Hb_008406_070 Hb_000454_080--Hb_008406_070 Hb_001769_120 Hb_001769_120 Hb_000454_080--Hb_001769_120 Hb_002151_130 Hb_002151_130 Hb_005348_090--Hb_002151_130 Hb_005348_090--Hb_000003_240 Hb_000260_300 Hb_000260_300 Hb_005348_090--Hb_000260_300 Hb_005348_090--Hb_124677_020 Hb_004235_060 Hb_004235_060 Hb_005348_090--Hb_004235_060 Hb_000172_410 Hb_000172_410 Hb_002400_020--Hb_000172_410 Hb_002374_200 Hb_002374_200 Hb_002400_020--Hb_002374_200 Hb_001660_080 Hb_001660_080 Hb_002400_020--Hb_001660_080 Hb_121540_010 Hb_121540_010 Hb_002400_020--Hb_121540_010 Hb_002400_020--Hb_002311_160 Hb_005381_010 Hb_005381_010 Hb_002400_020--Hb_005381_010 Hb_002311_160--Hb_001660_080 Hb_002311_160--Hb_000172_410 Hb_006615_060 Hb_006615_060 Hb_002311_160--Hb_006615_060 Hb_002311_160--Hb_005381_010 Hb_164146_020 Hb_164146_020 Hb_002311_160--Hb_164146_020 Hb_000336_060 Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_124677_020--Hb_000260_300 Hb_124677_020--Hb_002151_130 Hb_022137_020 Hb_022137_020 Hb_124677_020--Hb_022137_020 Hb_001999_170 Hb_001999_170 Hb_124677_020--Hb_001999_170 Hb_155946_030 Hb_155946_030 Hb_124677_020--Hb_155946_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.780341 0.788077 0.242547 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185398 0.0728617 0 0.0595653 0.142264

CAGE analysis