Hb_002982_030

Information

Type -
Description -
Location Contig2982: 19495-21057
Sequence    

Annotation

kegg
ID rcu:RCOM_0661520
description Chalcone synthase, putative (EC:2.3.1.74)
nr
ID XP_002529257.1
description Chalcone synthase, putative [Ricinus communis]
swissprot
ID Q8LDM2
description Type III polyketide synthase B OS=Arabidopsis thaliana GN=PKSB PE=1 SV=1
trembl
ID B9STD8
description Chalcone synthase, putative OS=Ricinus communis GN=RCOM_0661520 PE=3 SV=1
Gene Ontology
ID GO:0016747
description chalcone synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002982_030 0.0 - - Chalcone synthase, putative [Ricinus communis]
2 Hb_007894_020 0.160209785 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
3 Hb_008406_080 0.1727873343 - - Nonspecific lipid-transfer protein 3 precursor, putative [Ricinus communis]
4 Hb_022137_020 0.1746383141 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
5 Hb_101058_020 0.1845564869 - - DWNN domain isoform 2 [Theobroma cacao]
6 Hb_009692_030 0.1850626782 - - WRKY DNA-binding protein 70, putative isoform 2, partial [Theobroma cacao]
7 Hb_002007_070 0.1865289759 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
8 Hb_000164_160 0.1890242337 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
9 Hb_004899_010 0.1915449701 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
10 Hb_002542_030 0.1932203958 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
11 Hb_109591_010 0.1933488404 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_001999_170 0.1991158269 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
13 Hb_008637_020 0.1998867268 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008651_010 0.2005325839 - - cytochrome P450, putative [Ricinus communis]
15 Hb_124677_020 0.2020007179 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
16 Hb_004612_020 0.2033106171 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
17 Hb_112703_010 0.2052041165 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
18 Hb_010126_030 0.205237933 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
19 Hb_000836_180 0.2079434765 - - ferric reductase oxidase [Manihot esculenta]
20 Hb_000819_020 0.2082378613 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]

Gene co-expression network

sample Hb_002982_030 Hb_002982_030 Hb_007894_020 Hb_007894_020 Hb_002982_030--Hb_007894_020 Hb_008406_080 Hb_008406_080 Hb_002982_030--Hb_008406_080 Hb_022137_020 Hb_022137_020 Hb_002982_030--Hb_022137_020 Hb_101058_020 Hb_101058_020 Hb_002982_030--Hb_101058_020 Hb_009692_030 Hb_009692_030 Hb_002982_030--Hb_009692_030 Hb_002007_070 Hb_002007_070 Hb_002982_030--Hb_002007_070 Hb_007894_020--Hb_101058_020 Hb_007894_020--Hb_022137_020 Hb_158926_010 Hb_158926_010 Hb_007894_020--Hb_158926_010 Hb_002542_030 Hb_002542_030 Hb_007894_020--Hb_002542_030 Hb_155946_030 Hb_155946_030 Hb_007894_020--Hb_155946_030 Hb_124677_020 Hb_124677_020 Hb_007894_020--Hb_124677_020 Hb_008406_080--Hb_007894_020 Hb_008406_080--Hb_101058_020 Hb_173271_010 Hb_173271_010 Hb_008406_080--Hb_173271_010 Hb_001268_060 Hb_001268_060 Hb_008406_080--Hb_001268_060 Hb_008406_080--Hb_022137_020 Hb_022137_020--Hb_101058_020 Hb_022137_020--Hb_158926_010 Hb_022137_020--Hb_002542_030 Hb_022137_020--Hb_124677_020 Hb_001999_170 Hb_001999_170 Hb_022137_020--Hb_001999_170 Hb_101058_020--Hb_158926_010 Hb_000665_090 Hb_000665_090 Hb_101058_020--Hb_000665_090 Hb_001894_060 Hb_001894_060 Hb_101058_020--Hb_001894_060 Hb_004079_040 Hb_004079_040 Hb_101058_020--Hb_004079_040 Hb_010223_010 Hb_010223_010 Hb_009692_030--Hb_010223_010 Hb_000997_130 Hb_000997_130 Hb_009692_030--Hb_000997_130 Hb_107174_010 Hb_107174_010 Hb_009692_030--Hb_107174_010 Hb_000592_070 Hb_000592_070 Hb_009692_030--Hb_000592_070 Hb_000192_030 Hb_000192_030 Hb_009692_030--Hb_000192_030 Hb_012400_020 Hb_012400_020 Hb_009692_030--Hb_012400_020 Hb_000680_180 Hb_000680_180 Hb_002007_070--Hb_000680_180 Hb_000162_130 Hb_000162_130 Hb_002007_070--Hb_000162_130 Hb_010126_030 Hb_010126_030 Hb_002007_070--Hb_010126_030 Hb_000256_180 Hb_000256_180 Hb_002007_070--Hb_000256_180 Hb_004612_020 Hb_004612_020 Hb_002007_070--Hb_004612_020 Hb_000984_290 Hb_000984_290 Hb_002007_070--Hb_000984_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.566102 0.488478 0.162349 0.0182412 0.0191807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0415651 0.0326953 0 0 0

CAGE analysis