Hb_001268_060

Information

Type -
Description -
Location Contig1268: 53433-55882
Sequence    

Annotation

kegg
ID rcu:RCOM_1446010
description hypothetical protein
nr
ID XP_002512875.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q4V8K5
description BRO1 domain-containing protein BROX OS=Rattus norvegicus GN=Brox PE=2 SV=1
trembl
ID B9RH16
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446010 PE=4 SV=1
Gene Ontology
ID GO:0005773
description bro1 domain-containing protein brox homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08090: 53867-55877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000836_160 0.16852725 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
3 Hb_082225_010 0.1808051297 - - DWNN domain isoform 2 [Theobroma cacao]
4 Hb_006043_020 0.1816865561 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
5 Hb_078171_010 0.1825926797 - - PREDICTED: uncharacterized RING finger protein P8B7.15c-like [Jatropha curcas]
6 Hb_000086_610 0.1862381487 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
7 Hb_031530_010 0.1874342741 - - DWNN domain isoform 2 [Theobroma cacao]
8 Hb_034642_010 0.1949976512 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
9 Hb_009683_050 0.1958286812 - - wall-associated kinase, putative [Ricinus communis]
10 Hb_018563_020 0.1960199134 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
11 Hb_008406_080 0.1971332858 - - Nonspecific lipid-transfer protein 3 precursor, putative [Ricinus communis]
12 Hb_006538_030 0.201373058 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
13 Hb_022137_020 0.2028406534 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
14 Hb_005976_040 0.2071302912 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
15 Hb_000260_300 0.210871901 - - calcium binding protein/cast, putative [Ricinus communis]
16 Hb_007894_020 0.2120061587 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
17 Hb_101058_020 0.2132401058 - - DWNN domain isoform 2 [Theobroma cacao]
18 Hb_002982_030 0.2143671088 - - Chalcone synthase, putative [Ricinus communis]
19 Hb_001277_200 0.2193866702 - - cation-transporting atpase plant, putative [Ricinus communis]
20 Hb_001404_010 0.2201710674 - - hypothetical protein JCGZ_22818 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_060 Hb_001268_060 Hb_000836_160 Hb_000836_160 Hb_001268_060--Hb_000836_160 Hb_082225_010 Hb_082225_010 Hb_001268_060--Hb_082225_010 Hb_006043_020 Hb_006043_020 Hb_001268_060--Hb_006043_020 Hb_078171_010 Hb_078171_010 Hb_001268_060--Hb_078171_010 Hb_000086_610 Hb_000086_610 Hb_001268_060--Hb_000086_610 Hb_031530_010 Hb_031530_010 Hb_001268_060--Hb_031530_010 Hb_032920_040 Hb_032920_040 Hb_000836_160--Hb_032920_040 Hb_006538_030 Hb_006538_030 Hb_000836_160--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000836_160--Hb_000045_140 Hb_005976_040 Hb_005976_040 Hb_000836_160--Hb_005976_040 Hb_000532_030 Hb_000532_030 Hb_000836_160--Hb_000532_030 Hb_000836_160--Hb_082225_010 Hb_082225_010--Hb_031530_010 Hb_001404_010 Hb_001404_010 Hb_082225_010--Hb_001404_010 Hb_082225_010--Hb_032920_040 Hb_000827_090 Hb_000827_090 Hb_082225_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_082225_010--Hb_010142_040 Hb_158926_010 Hb_158926_010 Hb_082225_010--Hb_158926_010 Hb_002053_030 Hb_002053_030 Hb_006043_020--Hb_002053_030 Hb_006043_020--Hb_005976_040 Hb_000260_300 Hb_000260_300 Hb_006043_020--Hb_000260_300 Hb_000345_500 Hb_000345_500 Hb_006043_020--Hb_000345_500 Hb_018563_020 Hb_018563_020 Hb_006043_020--Hb_018563_020 Hb_006043_020--Hb_006538_030 Hb_034642_010 Hb_034642_010 Hb_078171_010--Hb_034642_010 Hb_027506_060 Hb_027506_060 Hb_078171_010--Hb_027506_060 Hb_034581_010 Hb_034581_010 Hb_078171_010--Hb_034581_010 Hb_157957_010 Hb_157957_010 Hb_078171_010--Hb_157957_010 Hb_110356_010 Hb_110356_010 Hb_078171_010--Hb_110356_010 Hb_000359_230 Hb_000359_230 Hb_078171_010--Hb_000359_230 Hb_001846_040 Hb_001846_040 Hb_000086_610--Hb_001846_040 Hb_000086_610--Hb_006538_030 Hb_019654_010 Hb_019654_010 Hb_000086_610--Hb_019654_010 Hb_000322_120 Hb_000322_120 Hb_000086_610--Hb_000322_120 Hb_011287_020 Hb_011287_020 Hb_000086_610--Hb_011287_020 Hb_009683_050 Hb_009683_050 Hb_000086_610--Hb_009683_050 Hb_031530_010--Hb_001404_010 Hb_031530_010--Hb_032920_040 Hb_031530_010--Hb_000827_090 Hb_000313_190 Hb_000313_190 Hb_031530_010--Hb_000313_190 Hb_003023_060 Hb_003023_060 Hb_031530_010--Hb_003023_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.38576 0.509677 0.35881 0 0.0175684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0772144 0.21259 0 0.0121567 0

CAGE analysis