Hb_008203_020

Information

Type -
Description -
Location Contig8203: 40501-43673
Sequence    

Annotation

kegg
ID rcu:RCOM_0900830
description protein kinase, putative
nr
ID XP_002517656.1
description protein kinase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV87
description Protein kinase, putative OS=Ricinus communis GN=RCOM_0900830 PE=4 SV=1
Gene Ontology
ID GO:0004672
description e3 ubiquitin-protein ligase keg-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008203_020 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_074184_010 0.1492615173 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_114674_010 0.1559589405 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_007951_120 0.2032450184 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
5 Hb_115513_030 0.2046361945 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
6 Hb_007188_060 0.2083001042 - - -
7 Hb_015928_020 0.213455538 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
8 Hb_114250_010 0.217373334 - - conserved hypothetical protein [Ricinus communis]
9 Hb_029689_010 0.2174987387 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_014361_050 0.225799194 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
11 Hb_002374_330 0.2355733972 - - -
12 Hb_000284_180 0.2433956404 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
13 Hb_000540_220 0.2483174271 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
14 Hb_095575_010 0.2501309935 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
15 Hb_163508_010 0.2536625568 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
16 Hb_000221_230 0.2545315392 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
17 Hb_003216_050 0.2551517474 - - PREDICTED: OBERON-like protein [Jatropha curcas]
18 Hb_002326_070 0.2558528237 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
19 Hb_027402_040 0.2561927607 - - Thioredoxin II, putative [Ricinus communis]
20 Hb_183192_010 0.2566686132 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]

Gene co-expression network

sample Hb_008203_020 Hb_008203_020 Hb_074184_010 Hb_074184_010 Hb_008203_020--Hb_074184_010 Hb_114674_010 Hb_114674_010 Hb_008203_020--Hb_114674_010 Hb_007951_120 Hb_007951_120 Hb_008203_020--Hb_007951_120 Hb_115513_030 Hb_115513_030 Hb_008203_020--Hb_115513_030 Hb_007188_060 Hb_007188_060 Hb_008203_020--Hb_007188_060 Hb_015928_020 Hb_015928_020 Hb_008203_020--Hb_015928_020 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_065755_020 Hb_065755_020 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_000221_230 Hb_000221_230 Hb_074184_010--Hb_000221_230 Hb_004495_010 Hb_004495_010 Hb_074184_010--Hb_004495_010 Hb_114250_010 Hb_114250_010 Hb_114674_010--Hb_114250_010 Hb_114674_010--Hb_115513_030 Hb_095575_010 Hb_095575_010 Hb_114674_010--Hb_095575_010 Hb_114674_010--Hb_029689_010 Hb_181824_010 Hb_181824_010 Hb_114674_010--Hb_181824_010 Hb_102100_010 Hb_102100_010 Hb_007951_120--Hb_102100_010 Hb_007951_120--Hb_181824_010 Hb_033149_020 Hb_033149_020 Hb_007951_120--Hb_033149_020 Hb_056012_010 Hb_056012_010 Hb_007951_120--Hb_056012_010 Hb_006414_020 Hb_006414_020 Hb_007951_120--Hb_006414_020 Hb_003216_050 Hb_003216_050 Hb_007951_120--Hb_003216_050 Hb_115513_030--Hb_114250_010 Hb_002897_020 Hb_002897_020 Hb_115513_030--Hb_002897_020 Hb_000819_020 Hb_000819_020 Hb_115513_030--Hb_000819_020 Hb_000836_180 Hb_000836_180 Hb_115513_030--Hb_000836_180 Hb_000540_220 Hb_000540_220 Hb_007188_060--Hb_000540_220 Hb_163508_010 Hb_163508_010 Hb_007188_060--Hb_163508_010 Hb_000164_090 Hb_000164_090 Hb_007188_060--Hb_000164_090 Hb_055339_010 Hb_055339_010 Hb_007188_060--Hb_055339_010 Hb_007188_060--Hb_074184_010 Hb_014361_050 Hb_014361_050 Hb_015928_020--Hb_014361_050 Hb_061466_020 Hb_061466_020 Hb_015928_020--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_015928_020--Hb_000997_010 Hb_015928_020--Hb_074184_010 Hb_006286_010 Hb_006286_010 Hb_015928_020--Hb_006286_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139844 0.695983 0.397687 0.145665 0.0576138 0.17675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0470989 0

CAGE analysis