Hb_123885_010

Information

Type -
Description -
Location Contig123885: 2825-6284
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123885_010 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_185513_010 0.1565520573 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003637_020 0.1707100977 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003155_020 0.1838186435 - - Rpp4C3 [Medicago truncatula]
5 Hb_126506_010 0.1870143199 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_103788_010 0.1935305173 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_000270_770 0.2049833561 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
8 Hb_012725_040 0.2057829866 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_002760_040 0.2087285694 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
10 Hb_009897_020 0.2097065338 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_002918_150 0.2116364405 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
12 Hb_000003_430 0.2119268287 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_000331_280 0.2142209352 - - AMP dependent CoA ligase, putative [Ricinus communis]
14 Hb_001248_110 0.2169054401 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_162074_010 0.2169287172 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_000699_190 0.2180432319 - - unknown [Populus trichocarpa]
17 Hb_009838_060 0.2198525264 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004108_170 0.2209257865 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009897_010 0.2235473414 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_001278_040 0.2246102176 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_123885_010 Hb_123885_010 Hb_185513_010 Hb_185513_010 Hb_123885_010--Hb_185513_010 Hb_003637_020 Hb_003637_020 Hb_123885_010--Hb_003637_020 Hb_003155_020 Hb_003155_020 Hb_123885_010--Hb_003155_020 Hb_126506_010 Hb_126506_010 Hb_123885_010--Hb_126506_010 Hb_103788_010 Hb_103788_010 Hb_123885_010--Hb_103788_010 Hb_000270_770 Hb_000270_770 Hb_123885_010--Hb_000270_770 Hb_012725_040 Hb_012725_040 Hb_185513_010--Hb_012725_040 Hb_185513_010--Hb_003637_020 Hb_185513_010--Hb_103788_010 Hb_056012_010 Hb_056012_010 Hb_185513_010--Hb_056012_010 Hb_000117_060 Hb_000117_060 Hb_185513_010--Hb_000117_060 Hb_001865_060 Hb_001865_060 Hb_185513_010--Hb_001865_060 Hb_003637_020--Hb_103788_010 Hb_003637_020--Hb_000117_060 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020 Hb_009897_010 Hb_009897_010 Hb_003155_020--Hb_009897_010 Hb_000123_350 Hb_000123_350 Hb_003155_020--Hb_000123_350 Hb_005203_020 Hb_005203_020 Hb_003155_020--Hb_005203_020 Hb_003155_020--Hb_001865_060 Hb_011716_110 Hb_011716_110 Hb_003155_020--Hb_011716_110 Hb_001907_100 Hb_001907_100 Hb_003155_020--Hb_001907_100 Hb_162074_010 Hb_162074_010 Hb_126506_010--Hb_162074_010 Hb_155642_010 Hb_155642_010 Hb_126506_010--Hb_155642_010 Hb_126506_010--Hb_003155_020 Hb_009897_020 Hb_009897_020 Hb_126506_010--Hb_009897_020 Hb_001248_110 Hb_001248_110 Hb_126506_010--Hb_001248_110 Hb_103788_010--Hb_003752_120 Hb_002915_070 Hb_002915_070 Hb_103788_010--Hb_002915_070 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080 Hb_000003_430 Hb_000003_430 Hb_000270_770--Hb_000003_430 Hb_001956_190 Hb_001956_190 Hb_000270_770--Hb_001956_190 Hb_000270_770--Hb_103788_010 Hb_000270_770--Hb_185513_010 Hb_006711_070 Hb_006711_070 Hb_000270_770--Hb_006711_070 Hb_000270_770--Hb_003637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12205 10.5312 0.524407 3.74659 0.493762 2.58742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19191 0.40155 0.237818 1.66378 0.263501

CAGE analysis