Hb_030215_010

Information

Type -
Description -
Location Contig30215: 13731-20478
Sequence    

Annotation

kegg
ID sly:104644410
description uncharacterized LOC104644410
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030215_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_009066_010 0.2222168125 - - -
3 Hb_068347_020 0.2223370094 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_027394_010 0.2223377445 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_021068_020 0.2228817536 - - -
6 Hb_136856_010 0.2249347912 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
7 Hb_089491_010 0.2340391316 - - -
8 Hb_009268_110 0.2346297298 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
9 Hb_013205_010 0.2371937098 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
10 Hb_010399_020 0.2499375756 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_008151_030 0.2516930585 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_013727_010 0.2538019445 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
13 Hb_034667_010 0.2547133558 - - -
14 Hb_000260_190 0.2567071304 - - -
15 Hb_003772_040 0.2575139713 - - -
16 Hb_002400_450 0.2578996311 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
17 Hb_003400_030 0.2602524128 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
18 Hb_000944_010 0.2603019485 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
19 Hb_008473_010 0.2658294531 - - PREDICTED: laccase-14-like [Jatropha curcas]
20 Hb_091369_010 0.2663524678 - - -

Gene co-expression network

sample Hb_030215_010 Hb_030215_010 Hb_009066_010 Hb_009066_010 Hb_030215_010--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_030215_010--Hb_068347_020 Hb_027394_010 Hb_027394_010 Hb_030215_010--Hb_027394_010 Hb_021068_020 Hb_021068_020 Hb_030215_010--Hb_021068_020 Hb_136856_010 Hb_136856_010 Hb_030215_010--Hb_136856_010 Hb_089491_010 Hb_089491_010 Hb_030215_010--Hb_089491_010 Hb_009066_010--Hb_068347_020 Hb_009066_010--Hb_027394_010 Hb_009066_010--Hb_021068_020 Hb_009066_010--Hb_136856_010 Hb_009066_010--Hb_089491_010 Hb_009268_110 Hb_009268_110 Hb_009066_010--Hb_009268_110 Hb_068347_020--Hb_027394_010 Hb_068347_020--Hb_021068_020 Hb_068347_020--Hb_136856_010 Hb_013205_010 Hb_013205_010 Hb_068347_020--Hb_013205_010 Hb_068347_020--Hb_089491_010 Hb_027394_010--Hb_021068_020 Hb_027394_010--Hb_136856_010 Hb_027394_010--Hb_013205_010 Hb_027394_010--Hb_089491_010 Hb_021068_020--Hb_136856_010 Hb_021068_020--Hb_089491_010 Hb_021068_020--Hb_009268_110 Hb_136856_010--Hb_089491_010 Hb_136856_010--Hb_009268_110 Hb_089491_010--Hb_009268_110 Hb_013727_010 Hb_013727_010 Hb_089491_010--Hb_013727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0469103 0 0.157666 0.287648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis